Anaerolinea thermophila: ANT_20420
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Entry
ANT_20420 CDS
T01410
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
atm
Anaerolinea thermophila
Pathway
atm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
atm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ANT_20420 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atm03400
]
ANT_20420 (mfd)
Enzymes [BR:
atm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ANT_20420 (mfd)
DNA repair and recombination proteins [BR:
atm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ANT_20420 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_16
RecG_dom3_C
AAA_22
UB2H
DUF3638
Motif
Other DBs
NCBI-ProteinID:
BAJ64068
UniProt:
E8MXI7
LinkDB
All DBs
Position
complement(2296065..2299454)
Genome browser
AA seq
1129 aa
AA seq
DB search
MLDSIRSLKAYQNLLEDLRAGLPLPGLALMRSARIPLAESLREDLRRPVFLITDRADHAL
YWFDELSFWAKGLPVYLFPEPVPLFYEPAAWGANVRRDRIQVLTLLARYAIPGVSKPEVP
PIIVAPIRAVMTRTLPRREFLKASKQIRQGQTISLEALKRWWVEVGYQPMDTVLEPGQFS
HRGGILDIWPPAETFPVRLEFFGDEIETLRTFDPSTQRKIQPISSVLITPAREVLPGKAA
ELNLALQDVDEFYLPLVHTAPASVLEFLPQNALVVLDDLDLLQTFSNEIEEQAVKTRRDS
INEGLLEKDFPVPYLSFSEIKEILSAYSWLELGRGTATENSPLAEAFQPGPRFGGRLKSF
VEFMLSGCREHQRFFILSRQVGRIREVWQEQSEQYPDICQPDFMEGTLSEGWVLTQDDGR
QVFLFTDSEIFGWDRPQPRGRARQAVTPPEAEYTDFKVGDYIVHVDYGIGRFAGLSRRTV
DGVEREYLAIEYEGGDTIFVPVYQADRLTRYVGPSGETPSLTHLGGTEWASVKQRVRESV
LEVAQELLELYAKRQVAKGHAFSPDTMWQKELEASFPYIETEDQIKAIQAVKRDMERPRP
MDRLLCGDVGYGKTEVALRAAFKAVMDGKQVAMLVPTTVLAQQHFETFRQRLAPFPVMVE
MLSRFRTPKEQERILQQLREGTVDIIIGTHRLLQPDVAFKDLGLVIIDEEQRFGVTHKEY
FKKLRTEVDVLTLTATPIPRTLYMALTGVRDISQINTPPAERLPIITHIGPYSPRLVRQA
ILREIERGGQVFFVHNRVQTIHAMEQHLQKLVPEARIGIAHGQMPEEALSRVMMAFTRGE
LDVLLCTSIIESGLDIPNANTLIVDRGDTFGLAQLYQLRGRVGRGAQRAYAYFFRHRRKA
PTPEGQERLEIIAENTQLGSGYSIAMRDLEMRGAGELLGTRQHGMIAAVGFHLYTRLLAQ
AVRQIREVSGISVSAEEELKGGIPNPVNVDLPLAMGIPVSYIPDQHLRLKLYRRLADVER
EDELDALEEEFRDRFGPIPEQVKNLIYQMRVKLYAQKVGLSSVSFEGDQIVLRFPPLPEG
LSERGLPPLGRDVRAGKNAYWLLAQAQNWQERLLEVLKGIDEHVHRVAH
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgattcgattcgttccctgaaggcttaccagaatcttctggaggatttacgggca
gggttgcctttgcccggcttagccctgatgcgctctgccagaatccctctggcagaaagt
ctgcgagaagatttgcgccgccctgttttcctgattaccgaccgcgctgaccatgcgcta
tactggtttgacgaactttccttctgggcaaagggattgcccgtttacctgttccctgaa
ccggtaccgttgttttatgagccagccgcctggggagccaatgtccggcgtgatcgcatt
caggtgctgacgttactggcacgctatgccattcccggggtttccaagccagaagttccc
ccaatcattgtggctcccatccgcgcagtgatgacccgtaccctgcccaggcgcgaattt
ctgaaagccagtaaacaaatacgtcagggacaaaccatttctctggaagcattaaagcgc
tggtgggtagaggttggctatcagccaatggatacagtactggagccagggcaattttcg
catcgtgggggcattctggatatttggcctcccgccgaaacttttcccgtccgcctggag
tttttcggggatgaaatcgaaaccttacgcacgtttgacccatctacccagcgtaaaatc
cagcccatttcgtctgtattgatcacaccagcacgtgaagtcttacctggaaaagcggcg
gaattaaatcttgcccttcaggatgtagatgagttttatttaccccttgtccatactgct
ccggcaagtgtgctggaatttcttccacagaatgccctggtagtcctggatgatctggat
ttgctccaaactttcagcaatgagattgaagaacaggcagtcaaaacgcgccgagatagc
attaacgaagggcttcttgagaaagactttccagttccctatctctcattttccgaaatt
aaggaaatcctcagcgcctattcatggcttgagttagggcgtggaacggctacggaaaat
tcccctctcgccgaggcgtttcaacccggtcctcgttttggtgggcgtttgaaatctttt
gtggaatttatgctctctggttgcagggaacaccagcgattcttcatcctttccagacag
gtggggaggattcgtgaggtctggcaggaacagtccgaacagtatcctgacatttgtcag
cccgacttcatggaaggaaccttgagcgaaggttgggtgctgacacaggatgatggtcga
caggttttcctgttcacagatagtgaaatctttggatgggatcgtcctcaacctcgaggc
agagcgcgtcaggcagtgactcctcccgaggcggaatatacggatttcaaagtcggtgat
tacatcgttcatgtggattatggcattgggcgttttgccggcttaagccgccgcactgtg
gatggcgttgagcgtgagtatttagccattgaatacgagggcggagatacaatttttgtc
cctgtctatcaggcagatcgcctaacccgttatgttggtcccagtggggagaccccttcc
ttaacacatctgggcggcacggaatgggcatcggtcaagcaacgggtgcgtgagtcggtg
ctggaagtcgctcaggaactgctcgagttgtacgccaaacgtcaggtggcaaagggacac
gctttttcacccgatacgatgtggcagaaagaactggaagccagttttccttatattgaa
accgaggaccagatcaaagccatccaggcggtcaagcgggatatggaacgtccccgtccc
atggatcgcttgctttgcggagatgtggggtatggaaagaccgaagtagcattgcgagcc
gcttttaaggctgtaatggacggtaaacaggtcgccatgctggtacctaccactgtactt
gcacaacaacactttgaaactttccgtcagcggcttgcgcccttcccggtaatggtggaa
atgctcagccgctttcgtacccctaaagagcaggaacgcatccttcagcaacttcgtgaa
ggaacggtagatattatcattggaacgcaccgattactccagcctgatgtagcctttaaa
gacctgggcttggttatcattgatgaggaacaacgctttggtgtgacgcacaaagaatac
ttcaaaaaattgcgcaccgaggtcgatgttctgacgctgaccgccactcccatcccgcgt
actctctacatggcactgacgggcgtgcgcgacatctctcaaatcaacaccccgccggcc
gagcgtttgcccattattacccacattgggccatattctccaaggctggtcagacaggca
atcttgcgggaaattgagcgcggtgggcaggtattctttgtccataaccgcgtgcaaact
atccatgccatggaacaacatctgcaaaaactggtgccagaagcccgcattggcattgct
catggacagatgcccgaagaagccctctcgcgcgtcatgatggcgttcactcgcggagaa
ctggatgtcttactgtgtacctcgattatcgagtccgggttggatatccccaatgcgaat
acgctgattgtggatcgtggtgatacttttggcttggcgcaactctatcaattgcgtggt
agagtagggcggggtgctcagcgggcatatgcgtactttttccgtcatcgcaggaaggca
cccacgccagaaggacaggaacgcctggagatcattgccgagaatacacagttgggttca
ggatattccattgccatgcgagatttggagatgcgtggtgcgggggaattgctgggaaca
cgccagcatggcatgatcgctgcggtaggtttccacctgtatactcgcttactggcgcaa
gccgtgcgtcaaatccgggaagtcagcgggatttctgtttctgcagaggaagagttgaag
ggagggattcccaatcctgttaatgtggatttgccactggcaatgggcatccctgtctct
tatatccccgatcaacatcttcgcctgaaactgtaccgtcgccttgccgatgtggagcga
gaagacgaactggatgcgctggaagaggagtttcgtgaccgctttgggcctattcctgag
caagttaaaaatctcatttatcagatgcgagtcaaactgtacgctcaaaaagtagggttg
tcctcggtttcctttgaaggagatcagattgtccttcgtttcccgcctttgcccgaaggt
ttatctgagcgcggacttcctccgcttgggagggacgtgcgcgcagggaaaaatgcttac
tggcttctggctcaggcgcaaaactggcaggaaaggttgctggaagtgctgaaaggaatt
gatgaacatgtccaccgtgttgctcattga
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integrated database retrieval system
