Acinetobacter tandoii: FM020_07410
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Entry
FM020_07410 CDS
T06790
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
atn
Acinetobacter tandoii
Pathway
atn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
atn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FM020_07410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atn03400
]
FM020_07410
Enzymes [BR:
atn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FM020_07410
DNA repair and recombination proteins [BR:
atn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FM020_07410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QDK97724
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All DBs
Position
1566104..1569562
Genome browser
AA seq
1152 aa
AA seq
DB search
MFQQEIAQLNLSKLKAGDKRWIGQLQGSAAALLFKEISKQHQQLFILVARNSQHLAQLES
ELEFYGVKPTIFPDWEILPYDRLSPHQDIVSERLAILSNMPQQGVLLVSASTLAQRVAPT
SWVLGEHFDIHVSQKFDIEKQKLRLIQAGYHLVDTVYDHGEFAVRGSIMDIFASGQNAPI
RIDLFDDEIESLKFFDPETQRTTQNLEKFSVLPAKEFPLKEGRSVFRDRYAESFPTANPK
KNPIYQDVLEGIASPGIEFYLPLFFEKALMQSQSTLMAYLPENGIVITDNGLDDGLANFW
KEVMRRYEDRRHNVDHPILPPDELFLAPNLVLERLNKFARVIASSEAAEERAGAINLDTE
TPPRLAVDPKQEKPFAAVKKYLDEVNHPVLLVAESAGRRETLKDALRPFLGDIPSVESFA
DFQQSLQAIAITNAPLDRGLVIRGQLSVISENQLYEHRVVQRRRKRQQEVSEEFLIKSLT
ELSIGAPVVHIDHGVGRYAGLITLSIDDQEHEFLQLDYADAAKVYVPVTNLHLISRYSGG
DPDLAPLHKLGTDAWNKAKRKALEQIHDVAAELLHIQARRQSKPGISFELDHSLYMQFAS
GFAYEETLDQANAIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNNKQVAVL
VPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSSKTHLKTIEELADGKVDIVVGTHKILQ
ENVQFKNLGLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSI
IATPPARRLAVKTFVQEHTAESVKEAILRELLRGGQVYFLHNEVETIERAAESLRELVPE
ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ
LHQLRGRVGRSHHQAYAYLLVPSLKGLKGDAEKRLDAIQRAATLGAGFMLATEDLEIRGA
GELLGEQQSGSMQAIGYSLYMEMLEKATKAIQKGKTPNFDAPLSLTAEINLHMPALIPDE
YLGDVHQRLLFYKRISNTDTQEKLDNIRMELIDRFGIPPQPVKQLFAVHQLRLKAEMLGI
TKIDINTNGGYIEFSQDTPVQAMSIINMMQKHPTFFRMEGGQRLKVMVMLEDFQKRIQFI
NDLLENLIKELN
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgttccaacaagaaattgctcaacttaatctgtctaaattgaaagcaggtgacaaacgc
tggatcggacaattacaaggttcagctgctgcactattatttaaagaaatctcaaaacaa
caccaacaactatttatattggttgctcgcaatagtcagcatttagctcaattagaaagt
gaactggaattttatggggtaaaaccgactattttcccagattgggaaatcttaccttat
gatcgcttatcacctcatcaagatattgtctcagagcgattagcaattttatccaatatg
ccgcagcaaggtgtattactggtttcagcttccactttagcacaacgtgttgcaccaact
tcatgggtgcttggtgagcattttgatattcatgtttcacaaaaatttgatatcgagaag
caaaaactgcgactgattcaggcaggctatcatttggttgatacagtctatgatcatggt
gagtttgctgtgcgcggcagcatcatggatatttttgcttcaggacaaaatgcaccaata
cgcattgacctttttgatgatgaaattgaaagtctgaagttctttgatcctgaaacgcag
cgaacgacacaaaacctagaaaaatttagtgtacttcctgctaaagagtttccattaaaa
gaagggcgttctgtatttagagatcgctacgcagaaagttttccaaccgcgaatccgaaa
aagaatccaatttatcaagatgtattagaagggattgcttcaccagggattgagttctat
ttgcctttgttttttgaaaaagcactgatgcaaagtcaaagtaccttgatggcgtattta
ccagagaatggcattgtcattacagataatggactggatgacgggttagcaaacttctgg
aaagaagtaatgcgtcgttatgaagaccgtcggcataatgtagatcatccaattctgccg
cccgatgagttgtttcttgcgccaaatttagtattagagcggcttaataagtttgcccgt
gtgattgcttcatccgaagctgctgaagagcgtgctggtgctataaatttagataccgaa
actcctccgcgtttggcggttgatcctaagcaagaaaagccttttgcagctgttaaaaag
tatttggatgaggtcaatcatccagtattactggttgctgaaagtgcaggtcgacgcgaa
accttaaaagatgctttacgcccatttttaggtgatattccaagtgtagaaagctttgct
gattttcagcagtctttgcaggcaattgccattaccaatgcacctctggaccgtggcttg
gtcatccgtggtcaattgagtgtaatttcagaaaatcagttgtatgaacatcgtgtggtg
cagcgacgtcgtaaacgccagcaggaggtttcagaagaatttcttattaagagtttgact
gaactgagtatcggtgcacctgtggtacatattgatcacggtgttgggcgctatgcaggc
ttaatcacgctcagtattgatgatcaagagcatgagtttttgcaattagactatgcagat
gcggcaaaagtttatgtacccgtgaccaatctgcatttaattagtcgctacagcggtggt
gatccagatcttgcgccattacacaaactgggtactgatgcttggaataaagccaaacgt
aaagccttggaacaaatccatgatgtcgccgcggagttgttgcatatacaggcacgacgc
caatctaaacccggcatcagtttcgagttggatcatagcttatatatgcagtttgccagt
ggctttgcttatgaggaaacgctggatcaagccaatgcaattgaagcgactttgcatgat
atgcaattggcgaaacctatggatcgactagtctgtggtgatgtaggctttggtaaaact
gaagtggcgatgcgtgccgcctttgtcgctgtgcaaaataacaagcaagtcgcagtattg
gtgccaactacgctattggcgcaacagcattatgaatcattcaaagaccgttttgccgac
tggcctgttcgaatcgaagttttatcacgctttggctcaagtaaaacccatcttaaaacc
atcgaagagttggcagatggtaaggtcgacattgtggtcggtacgcataagattttgcaa
gaaaacgtgcaattcaaaaatctgggtttaatgatcgtagatgaagagcatcgttttggg
gtgcgcgacaaagaacgtattaaggctatgcgtgcagatgtggatatgctgactttgacc
gcaacaccaattccacgaacactgaatatggcatttagcggcatgcgtgatctatcgatt
atcgcgacgccgccagcacgacgtttggcggtgaaaacctttgtccaagaacatacagca
gagtcggttaaagaggcgattctacgtgagttactacgtggcggacaggtttacttcctg
cataatgaagtcgaaaccattgaaagagccgcagaaagtcttcgtgaacttgtaccagaa
gcacgtgttgcggttgcgcatgggcaaatgcgtgaacgtgaactggaacaggtcatgcag
cagttctaccataaggaatacaacgtcttggtgtgctcaaccattattgaaactggtatt
gatgtgccaaacgccaataccattttaattgaacgtgcggataaactgggtttagcgcaa
ctgcatcagttacgtggacgtgttgggcgttctcatcatcaagcctatgcttatttattg
gtgccttcactaaaaggactcaaaggagatgcggaaaaacggcttgatgcgattcagcgt
gccgcgactttgggtgctggcttcatgttagcgactgaagatttagagattcgcggagca
ggtgaattattgggtgaacagcaaagtggttccatgcaagcgattggttatagcttgtat
atggagatgctggaaaaagccaccaaagccattcaaaaaggcaaaacgccaaacttcgat
gcaccattgtccttaacggccgaaatcaacttacatatgccagcgttaattccagatgaa
tatttgggggatgtgcatcagcgtttgttgttctataaacgtatcagtaataccgatacc
caagagaagctcgacaatattcgcatggaattgattgatcgttttggtattccaccgcaa
ccagtgaagcaattatttgcagtgcatcagttacgcctgaaggcagagatgttgggaatt
accaaaattgatatcaataccaatggcggctatatcgaattttctcaagacacgcctgtc
caagccatgagcatcattaacatgatgcaaaagcatccgaccttcttccgtatggaaggt
gggcagcgtttgaaagtcatggtcatgttggaagattttcaaaaaagaatacaatttatc
aatgatttactggaaaatttgatcaaagagttgaattaa
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integrated database retrieval system
