Acetobacter tropicalis: CIW82_11305
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Entry
CIW82_11305 CDS
T05181
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ato
Acetobacter tropicalis
Pathway
ato03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ato00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CIW82_11305 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ato03021
]
CIW82_11305 (rpoC)
03400 DNA repair and recombination proteins [BR:
ato03400
]
CIW82_11305 (rpoC)
Enzymes [BR:
ato01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CIW82_11305 (rpoC)
Transcription machinery [BR:
ato03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CIW82_11305 (rpoC)
DNA repair and recombination proteins [BR:
ato03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CIW82_11305 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Apocytochr_F_C
Peptidase_M23
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
ATJ91184
UniProt:
A0A291PII7
LinkDB
All DBs
Position
2451296..2455474
Genome browser
AA seq
1392 aa
AA seq
DB search
MNELMKILGQTGQAMTFDQIKIQLASPDQMRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKFRGIICEKCGVEVTLAKVRRERMGHIQLASPVAHIWFLKSL
PSRIGLMVDMTLKDLEKVLYFENYLVLEPGTSPLKQYSLLTEDQYLDVMDEYSEEGIEVG
IGAEAIKKVLERIDCDADKVHLRQELKETTSEAKRKKLVKRLKLIEAFAESGSRPEWMIL
DLVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYSKLEKYGHATTIKAAKRMVEKERPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIVLGLYYLSLEVPEFAATPDRSEYDNTTGELVKA
GAPSFSSIGEVEYALSAGVLKLHDKIRARLESVNKDGQKVYETIVTTPGRVLIAQILPKS
DAIPFSLINRQLTKKAVSDVIDTVYRHCGQKEAVIFCDRLMALGFRHAAKAGISFGKDDM
IIPAEKKVLVDRTAAEVKEFEQQYQDGLITAGERYNKVVDAWSRCTDEVQAAMTKEISRQ
EIGKPINSVWMMSHSGARGSPAQMKQLAGMRGLMAKPSGEIIEQPIIANFKEGLSVLDYF
TSTHGARKGLADTALKTANSGYLTRRLVDVAQDSIIIEEDCGTERGLTVRAVLDGGEIVA
SLSERILGRTAAADVVDPASGDVIVPRNHLIEEADAERIEKAGIESIFIRSVLTCDSRVG
VCGHCYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSMIEAS
RDGKVVIRNRNVVQNSQDVPIVMARNCEILLTDDAGVEKARYRVPYGARLLTTEGASVSR
GQKLAEWDPYTLPIITEQAGKIEYLDLIDSITLVERMDEVTGLTSKVVVDYKQAGKGVDL
RPRLQIKGPNGEVIKLENGSDARYFLSPETLLSVENGAEVHAGDVLARLPREGSKTRDIT
GGLPRVAELFEARRPKDHAIIAEMEGRVEFGKDYKSKRRIIVKNDETGEETEYLIPKGKH
VSVQEGDFVEKGDPLVDGPRVPHDILKVMGVEALSDYLVNEIQDVYRLQGVKINDKHIEV
IVRQMLQKVEILEPGDTTYLIGETVDRIELDIENTKCLNAGERPAVAMPVLQGITKASLQ
TQSFISAASFQETTRVLTEAATAGKVDRLNGLKENVIVGRLIPAGTGSVMNRLRAIAASQ
DKQRVGRSSAAE
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaactcatgaaaattcttggccagaccggccaggcgatgaccttcgatcagatc
aagatccagttggcatcacccgatcagatgcggtcttggtcatttggtgaaatcaagaag
cccgagaccatcaattaccggacattcaagccggagcgtgatggtctgttctgtgcgcgc
atttttggcccgatcaaggactacgaatgcctgtgcggcaagtacaagcggatgaagttc
cgcggcattatttgcgaaaaatgcggcgttgaagtcacgttggccaaggtgcgtcgtgaa
cgcatgggccacatccagcttgccagcccggttgcgcacatctggttcctgaaatctctg
cccagccgtatcggccttatggtcgatatgactctgaaagatctggaaaaggttctctat
tttgagaactatctggttctggagcccggcacatctccgctgaaacaatattctctgctg
accgaggaccagtacctcgatgtcatggacgaatatagcgaagaaggcatagaagtcggg
atcggtgccgaggccatcaagaaggttcttgagcgcattgattgtgatgccgacaaggtt
catctgcgtcaggaactgaaagaaaccacttcagaagccaagcgcaagaagctggtcaag
cgcctgaagctgattgaggcttttgctgaaagcggttctcgtccggaatggatgattctg
gatctggttccggtcattccgccggaactgcgtccgctggtgccgttggatggcggccgg
ttcgcaacgtctgatctgaacgatctgtatcgtcgcgttattaaccgtaacaaccgtctc
aagcgcctgatggaactgcgtgcgcctgatatcatcgtgcgtaacgaaaagcgcatgctt
caggaagctgttgacgccctgttcgataacggtcgccgtggtcgtgccattaccggtgcc
aacaagcgtccgctgaagtccctgtccgatatgctgaaaggcaagcagggccgcttccgt
cagaacctgcttggtaagcgcgttgactactccggtcgttccgtgatcgtggtcgggccg
gaactcaagctgcatcagtgtggcttgccgaagaagatggcgctggaactgttcaagccg
ttcatctactcgaagctggaaaagtacggtcatgcaacaaccattaaagctgcaaagcgg
atggttgaaaaagaacgtccggaagtctgggatattcttgaagaagtgatccgcgagcat
cctgtgatgctgaaccgcgcgcccacgcttcaccgtcttggtattcaggcgtttgaaccc
gtgctggttgaaggtaaggccatccagcttcatccgctggtttgcaccgcattcaacgcg
gacttcgatggtgaccagatggcggtgcacgtgccgttgagccttgaagctcagcttgaa
gcgcgtgtgctgatgatgtccaccaacaacattctcagcccagctaacggtaagcccatt
atcgtgccgtctcaggatattgttctgggtctttactatctcagcctcgaagtgccggaa
tttgctgcaacgcctgaccgcagtgaatatgacaacacgacgggtgaactggttaaagcc
ggcgctccttctttctcctccattggggaagtggaatatgcgctgagcgccggtgttctg
aagctgcatgacaaaatccgggcacgccttgaaagcgtgaacaaggacggtcagaaagtt
tacgaaaccatcgtgaccacgccaggccgcgttctgattgctcagatcctgccgaagagc
gacgctattccgttctcgctgatcaacagacagctgaccaaaaaggccgtgtctgatgtg
atcgatacggtttaccgtcactgcggtcagaaagaagcggttatcttctgtgaccgtctg
atggctcttggtttccgtcacgctgcaaaggcaggcatttccttcggtaaggatgacatg
atcatcccggctgaaaagaaagtgcttgttgatcgtacggctgctgaagtgaaggaattc
gaacagcagtatcaggatggtctgatcacggctggcgaacgctacaacaaggtggtcgat
gcctggtcacgctgcacggacgaagtgcaggcggccatgacgaaagagatttcccgtcag
gaaattggcaagcccattaactccgtatggatgatgagccactccggggcgcgtgggtca
ccggcccagatgaagcagctcgccggtatgcgtggtctgatggccaagccgtctggtgaa
attatcgaacagccgattatcgccaactttaaagaaggtctgtcggttctcgattacttt
acgtctacccatggtgcacgtaaggggctggccgataccgctctgaaaacggcgaactcc
ggttacctcacccgtcgtctggtggacgttgcgcaggatagcattatcattgaagaagac
tgcggtacggaacgtggtctgacggttcgcgccgttctcgatggtggtgaaattgttgcc
tccctgtcagaacgtatcctcggtcgtactgcggctgcggatgtggtcgatcctgcttct
ggtgacgtaattgttccgcgcaatcacctcattgaagaagcggatgcagagcgcattgaa
aaagcgggcattgagtccattttcatccgctccgtgctgacctgcgatagccgggtaggc
gtttgcggccattgctatggacgagaccttgcccgcggcacaccggtcaatattggtgaa
gccgttggtgttatcgcggcacagtctattggcgagcccggcactcagctgaccatgcgt
accttccatatcggtggtgcggctcagcgtggtgccgagcagtccatgatcgaagcatcc
cgtgacggtaaggttgttatccgcaaccgtaacgtggtgcagaactctcaggacgtgccg
attgtcatggcgcgtaactgtgaaattctgctgactgacgatgctggtgtggaaaaagcc
cgttatcgtgtgccttacggcgctcggttgctgacaacggaaggcgcatctgtgtcccgc
ggtcagaaactggcagagtgggatccctacaccctgccgatcatcacggagcaggctggt
aagattgaatatcttgacctgattgactccatcacgctcgttgagcgtatggacgaagtc
accggcctgacctccaaagtggtggttgactacaagcaggcagggaagggtgttgatctg
cggccgcgtctgcagatcaaaggcccgaacggcgaggtcatcaaactggaaaacggcagc
gatgcccgttacttcctgtcacctgaaacactgctgtccgttgaaaacggtgcagaagtt
catgccggtgacgttctggcccgtctgccgcgtgaaggctccaagacccgtgatattaca
ggtggtctgccgcgtgtggcagaactgtttgaagcacgtcgtccgaaagaccatgccatc
attgctgagatggaagggcgtgttgaattcgggaaggattacaagtccaagcgccgtatt
atcgtgaagaacgatgagacaggtgaagagaccgaatatctgatcccgaaaggcaagcac
gtttccgttcaggaaggtgactttgttgaaaagggcgatccgctggtcgatggtccccgc
gtgccgcatgatattctgaaggtcatgggggttgaggctctgtccgattacctcgtgaat
gaaattcaggatgtctatcgtcttcagggcgtgaagattaacgataagcatatcgaggtt
atcgttcgtcagatgctgcagaaggttgaaattctggagccaggcgacacgacatacctg
attggcgaaaccgttgatcggattgagctggatatcgaaaatacgaagtgcctgaacgcc
ggtgaacgtcctgctgtggctatgccggtgctgcaggggatcaccaaggcgtccctgcag
acacagtccttcatctctgcggcctccttccaggaaaccacgcgtgtcctgacggaagct
gcaacggccgggaaagtcgacagactgaacggcttgaaggaaaacgtgattgttgggcgc
ctgatccctgctgggacaggaagcgtcatgaaccgcctgcgggctattgctgcctctcag
gacaagcagcgggtcggacggtcttcagcagccgaataa
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integrated database retrieval system
