Acetobacter tropicalis: CIW82_15930
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Entry
CIW82_15930 CDS
T05181
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ato
Acetobacter tropicalis
Pathway
ato03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ato00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CIW82_15930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ato03019
]
CIW82_15930
Messenger RNA biogenesis [BR:
ato03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CIW82_15930
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
RMMBL
Lactamase_B
RNase_J_C
Cuticle_1
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ATJ91938
UniProt:
A0A094YLU3
LinkDB
All DBs
Position
complement(3471716..3473362)
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AA seq
548 aa
AA seq
DB search
MTDQNGDFAFLPLGGTGEIGMNLNLYRLGETWLAIDCGIGFSGNDTPEAEILVPDPTFIA
ERRDQLAGLVITHAHEDHIGAVAHLWPLLQCPVYVTPFAGAVLRRKLGEARLLQEVPIHV
IPCGGTFDVGPFNLEFIPVTHSVPEAQSVVLRTPAGIVVHTGDWKLDPDPLVGPPTDIKR
LKEVGEEGVLALVCDSTNVMKPGASQSESEVRRSMTDLIGSLKGRIAVTCFASNVARVET
IAMAAQAAGRTVVLVGRSLRNLDVAARECGYLSGVLPFLNEQDANDVPDDQTVMIITGSQ
GEPRSALSRISLDIHPNISLGEGDTVIYSSRMIPGNERAIMAVQDNLSRRGVRVITDKDH
FVHVSGHATGGDVSTMYDLIKPQYAVPVHGEWRHLTAHAALAQDKGIAPILLEDGDILRL
APGKAEVVDTAPSGRLALDGGRLLPMNGGVLAARRKMLFNGVVIASFAVDDEGFVIGEPK
LSAPGLLDPDDLESVRVREEFANALDVIPDELRNDDQAFRDAAKTALRRALGRKLQKRPL
VDVHVLRV
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgacagaccagaacggcgatttcgcctttctgcccttgggcggaacgggcgagattggc
atgaatcttaatctctatcgcctgggggaaacctggctggcgatagattgcggtattggt
tttagcggaaacgacacaccggaagctgaaattctggtgcctgatcccacctttattgca
gagcgtcgggaccagttggcagggttggtgattacccacgcccatgaagaccatattggt
gcggtggctcatctgtggccgcttctgcagtgtcccgtttacgtgaccccttttgctggg
gccgtgctgcgccgcaaactgggtgaagcccgcctgcttcaggaagtgccgattcacgtc
atcccttgtggtggcacgtttgatgtcgggccttttaatcttgagttcattcccgttacc
cattccgtgcccgaagcacagagcgttgttctgcgcacgcccgcagggattgtggtgcat
acaggggactggaaacttgatccggacccgcttgttgggccgccgacggatatcaaacgc
ctgaaggaagtgggtgaggaaggggttctggctctggtgtgtgacagcaccaacgtgatg
aagcccggtgcctcccagtccgaatcggaagtgcgtaggagcatgacggacctcatcggc
agccttaaaggccgtatcgccgttacctgctttgcgtccaacgtggcccgtgttgaaacc
attgccatggctgcacaggcggccggccgcacggtggttctggttggccgctccctgcgc
aatctggatgtggctgcgcgtgaatgtggatatctgtcaggtgttctgccgttcctgaac
gagcaggatgcgaatgatgtgcccgatgatcagacggtcatgatcattaccggaagccag
ggtgagccgcgctctgccttgtcccgcatctctctcgatattcaccccaacatttctctg
ggtgagggtgatacggttatctattccagccgtatgattccgggtaacgagcgcgccatt
atggccgtgcaggacaatctgtcccgtcgtggcgtgcgcgtgattacggataaagaccat
tttgtgcatgtatcgggtcacgccacgggcggtgacgtgagcaccatgtatgatctgatc
aagccgcaatacgctgtgccggttcacggcgaatggcgtcacctcacggcgcatgccgct
ttggcgcaggataagggtattgcccccattctgcttgaagatggcgatattctgcgtctt
gctccgggcaaggccgaagtggtggatactgcacccagcggtcgtctggcgctggatggt
ggccgtctgctgccaatgaatggtggcgttctggcggcgcgtcgcaagatgctgttcaac
ggtgtggtgattgccagctttgcggtggatgacgaagggtttgttattggcgaacccaaa
ctgagcgcgcccggcctgctggacccggatgatctggaaagcgtgcgcgtgcgtgaagaa
ttcgccaacgcgctggatgttattcccgatgaactgcggaatgatgatcaggcgttccgt
gatgccgccaagacggcattgcgccgggctctggggcgtaagcttcagaagcgcccgctg
gtggatgtgcacgttctgcgtgtctga
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