Aliarcobacter trophiarum: ATR_0047
Help
Entry
ATR_0047 CDS
T06356
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
atp
Aliarcobacter trophiarum
Pathway
atp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATR_0047
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atp03019
]
ATR_0047
03009 Ribosome biogenesis [BR:
atp03009
]
ATR_0047
Enzymes [BR:
atp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ATR_0047
Messenger RNA biogenesis [BR:
atp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ATR_0047
Ribosome biogenesis [BR:
atp03009
]
Prokaryotic type
rRNA helicases
ATR_0047
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_30
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
AXK47941
UniProt:
A0AAD0VLF6
LinkDB
All DBs
Position
complement(46875..48395)
Genome browser
AA seq
506 aa
AA seq
DB search
MTFKDFNFKENLQKAIDEAGFKEPSPIQIDAIPHILLGKDMVGQAHTGTGKTAAFGLPVL
NQLTGKNAEAVVIVPTRELAMQVSDELFKFGKFLGINTATVYGGQSYSRQLKLMETASVI
VATPGRFLDLLKNGHIKIKPRFVILDEADEMLDMGFLDDIKEIFTYLPETRQTLLFSATM
PTAIKNLAKTILKEPEFVTITKADVTNKNITQTFYVVDERERDDALIRLFDYKNPKKSII
FCRTKKDVDRLSTFLISQGFMAKSLHGDMEQKQREEAIKAFKTSKLEILIATDVAARGLD
VNDVTHVFNYHLPFDGESYVHRIGRTGRAGKEGVAISIVTPHEFRTLQRIEKTIGTKLES
KVVPNISTVKQKKIDELKQSILDQEIKDYAIAIVEELKDEFDISTIAFKLASIIASKTYV
KGNNHIGKSELDISRLIENVSRNNDRSDDRRGSSRGRGRSGGQRRDFAPRDDRGGQKKPS
TSRSRTSSSRDSADKPARSSRPRRRD
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgacttttaaagattttaatttcaaagaaaatttacaaaaagcaatagacgaagctgga
tttaaagagccaagtccaattcaaatagatgctatcccacatatacttttaggaaaagat
atggtaggacaagctcatacaggaacaggaaaaacagcagcttttggactacctgtttta
aatcaattaacgggtaaaaatgcagaggcagttgtaatagttccaacaagagaactagca
atgcaagtatctgatgaactttttaaatttggaaagtttctaggaataaatacagcaaca
gtttatggtggtcaatcatactcaagacaactaaaactaatggagactgctagtgtaatt
gtagcaacacctggaagatttttagatttattaaaaaatggacatataaaaatcaaacca
agatttgtaattttagatgaagcagatgagatgcttgacatgggattcttagatgatatt
aaagagattttcacatatcttcctgagactagacaaactttactattttcagcaacaatg
ccaacagcaataaaaaatctagcaaaaacaattttaaaagagccagagtttgtaacaatt
acaaaagctgatgtaacaaacaaaaacattactcaaactttctatgtagtagatgaaaga
gagagagatgatgcacttataagactttttgattataaaaatccaaaaaaatctataatt
ttttgtagaacaaaaaaagatgttgatagattatcaacttttttaatctctcaagggttt
atggctaaatcattacacggtgatatggagcaaaaacaaagagaagaagctattaaagca
tttaaaacttcaaagctagagattttaattgcaactgatgttgctgcaagaggacttgat
gtaaatgatgtaactcatgtatttaattatcacttgccttttgatggtgaatcttatgtt
catagaattggaagaacaggaagagctggaaaagaaggagttgctatttcaattgtaaca
cctcatgagtttagaactcttcaaagaattgaaaaaacaattggtacaaaattagaatct
aaagttgttccaaatatttcaactgtaaaacagaagaaaattgatgagcttaaacaatct
attttagatcaagagataaaagattatgcaatagctattgttgaagagttaaaagatgag
tttgacatatctacaattgcatttaaattagcttctataattgcttcaaaaacttatgta
aaggggaacaatcacataggaaaaagtgagcttgatataagtagattaatagaaaatgta
tcaagaaataacgatagaagtgatgatagaagaggttcttcaagaggaagaggaagaagt
ggtggacaaagaagagattttgctccaagagatgatagaggtggtcagaaaaagccctca
acatcaagaagtagaactagttcaagtagagattctgctgataaacctgcaagaagttca
agacctagaagaagagattaa
DBGET
integrated database retrieval system
