Aliarcobacter trophiarum: ATR_0104
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Entry
ATR_0104 CDS
T06356
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
atp
Aliarcobacter trophiarum
Pathway
atp03030
DNA replication
atp03430
Mismatch repair
atp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
atp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ATR_0104 (dnaE)
03430 Mismatch repair
ATR_0104 (dnaE)
03440 Homologous recombination
ATR_0104 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
atp03032
]
ATR_0104 (dnaE)
03400 DNA repair and recombination proteins [BR:
atp03400
]
ATR_0104 (dnaE)
Enzymes [BR:
atp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ATR_0104 (dnaE)
DNA replication proteins [BR:
atp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ATR_0104 (dnaE)
DNA repair and recombination proteins [BR:
atp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ATR_0104 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF4494
eIF-5_eIF-2B
Motif
Other DBs
NCBI-ProteinID:
AXK47997
UniProt:
A0AAD0QHL6
LinkDB
All DBs
Position
complement(98129..101692)
Genome browser
AA seq
1187 aa
AA seq
DB search
MSQIPQFTHLHLHTEYSLLDGANKIKPLAKKLKEFGMTSVAMTDHGNMFGAIDFYNAMKN
EGIKPIIGMEAYIHNSEDLSDKTNRQRFHLCLYAKDEIGYKNLMYLSSQAYINGFYYYPR
INKELLKKHSEGLVCSAACLQGEVNWHLNTQNERNVKNGAKGYEEAKKIALEYKEIFQDD
FYLEIMRHGIGDQHFVDDQILKISQETGIKVVATNDTHYLEQKDADAHEAFMCIAMNKLY
DDPNRLRHSVHEFYLKSPEQIYKLYADIPEAIESTQEIADKCNLTIKLGNPTPPNFKFTR
DKLEELNIKIPEPQNEYSLENDKVLFAFECRKGLEDRLKLVPIENHQEYKDRLELEINII
NSMKFPGYMLIVWDFVKVAKDMQIPVGPGRGSAAGSLVAYSLKITDIDPIPYGLLFERFL
NPERVSMPDIDMDFCQSRRGEIIDYVVNQYGRANVAQIITFGKLLAKGVIRDVARVLDMP
YAKADAMAKLIPDELGINLTSSWEKEPKIKELCEADPLAARVWEYALALEGLNRNAGTHA
AGVVISNEPLWNKTPLFKPSGLDTLATQYNGKYIEDVDLIKFDFLGLKTLTVIDEALKLI
EQRHGKKIDFKTIDVNDKGVYDLIQTGDTLGLFQIESDGMQDLCKRLKPSNFEDIVAVLA
LYRPGPMESGMLDDFIERKHGRAKIDYFHDELEEVLKPILENTYGVIVYQEQVMQIVQSV
GGFSLGGADLVRRAMGKKIKEEMDKLKGEFADGAEQKNFTRAYAEELFDLIVKFAGYGFN
KSHSAAYALVTFYTSYLKCYYKAEFMAALLTLEKDNTDKVVRYVDEVKRLGLDLFPPDIN
KSDLVFSATKIDGKEVVMFGMGAIKGAGDVAINSILKAREDGSFIDLSDFISRIDASKVN
KRVIESLTKAGVFDSFGYSRNALLSQIEKIVDGAGKASNAKKMSVGSLFGDSTELTSIEV
ELDNLPEYSKKEILELEKASLGFYVSGHPLDEYKDKIEKINYTLSSQIDELADGSQILIV
GKIETITEKISKKGSKFGIVSILDFHGTIEFMLFEDKLKELQESFDLNEPIAFKVRISKN
DQFTRMSVLKIETILDAQKERVNIKQKEIAEPPLTIALMFTEDEDSILKLFDLVINNQGK
RELKIIVKSKLADLELESGIKVSSTVEKLIHNIKGAYIVDDENSSNK
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaaataccacaatttacacacttacatttacatacagagtattcccttcttgat
ggtgcaaataaaatcaagccacttgcaaaaaagctaaaagagtttggaatgacaagtgtt
gctatgaccgaccatggaaatatgtttggagcaatagacttttacaatgctatgaagaat
gaaggaataaaaccaattattggaatggaagcctatatccacaatagtgaagatttaagt
gataaaacaaatcgtcaaagatttcacctatgtttatatgcaaaagatgaaataggctac
aaaaatcttatgtatctaagttcacaagcatatataaatggtttttactactatcccaga
ataaataaagaactcctaaaaaaacactctgaagggcttgtttgcagtgcagcttgttta
caaggagaagtaaactggcatttaaatactcaaaatgagcgaaatgtaaaaaatggtgca
aaaggatatgaagaggcaaaaaaaatagctcttgagtataaagagatttttcaagatgac
ttttatcttgaaattatgcgacatggtattggtgaccagcattttgtagatgaccaaatt
ctaaaaatttcacaagagacaggtataaaagtagttgctacaaatgatactcactattta
gaacaaaaagatgctgatgcacatgaagcatttatgtgtatcgcaatgaataaactttat
gatgatccaaatagattaagacatagtgtacatgagttttatctaaaatcacctgagcaa
atatacaagctttatgctgatattccagaagctattgaaagcactcaagaaatagcagat
aaatgtaatctaacaataaaactaggaaatcctactcctccaaattttaaatttacaaga
gataaattagaagagttaaatataaagataccagaaccacaaaatgagtattcactagaa
aatgacaaagttttattcgcctttgagtgtagaaaaggtttagaagataggttaaaatta
gtccctatagagaatcatcaagagtataaagatagacttgaacttgaaataaatattata
aatagtatgaaattccctggttatatgcttattgtttgggatttcgtaaaggttgcaaaa
gatatgcaaattcctgtaggtccaggacgaggttctgctgctggaagtttggttgcttat
agccttaagattacagatattgatccaattccttatggactgctttttgagagattttta
aatcctgaaagggtaagtatgcccgatattgatatggatttttgccaaagtaggcgtggt
gaaataatagactatgttgtaaatcagtatggaagagccaatgttgcacaaattataact
tttggtaaacttttagcaaaaggtgttatacgagatgttgcaagggttttagatatgcca
tatgcaaaagctgatgctatggcaaagctaattccagatgagctaggaataaatcttact
tcttcatgggaaaaagagccaaaaataaaagaactttgtgaagcagatccactagctgct
agagtttgggagtacgcactagcacttgaaggtctaaatagaaatgcaggaactcatgcc
gctggagttgtaatttcaaatgaaccactatggaataaaacaccactttttaaaccaagt
gggcttgatactttagctacacaatataacggaaaatatatagaagatgttgatttaata
aaattcgactttttaggacttaaaactcttacagttatagatgaagctttaaaactaata
gagcaaagacatggtaaaaaaatagattttaaaactatagatgtaaatgataaaggtgtt
tatgatttaattcaaactggtgataccctaggactatttcaaattgaatctgatggtatg
caagatttgtgtaaaagattaaaaccatcaaactttgaggatattgttgccgttcttgcc
ttatatagaccaggtcctatggaatctggaatgcttgatgactttattgaaagaaaacac
ggtcgtgcaaaaattgactatttccatgatgagcttgaagaggttttaaaaccaattttg
gaaaatacttatggagtaatcgtataccaagaacaagtaatgcaaattgttcaaagtgtt
ggtggtttctctttaggtggagctgaccttgtgcgaagagcaatgggtaaaaagattaaa
gaggagatggataaactaaaaggtgaatttgcagatggtgcagagcaaaagaattttaca
agagcctatgctgaagagctttttgatttgattgttaagtttgctgggtatggatttaat
aaatctcactcagcagcttatgcattagttactttttatacttcatatttaaaatgctac
tataaagctgaatttatggcagcacttttaacccttgaaaaagataatacagataaagtt
gtacgatatgtagatgaagtaaaaaggctaggattagaccttttcccaccagatataaat
aaatcagaccttgtattctcagccacaaaaatagatggtaaagaagttgtaatgtttgga
atgggtgcaattaaaggtgctggagatgttgcaataaattcaatattaaaagcaagagaa
gatggaagctttatagatttatcagattttatatcaagaatagatgcaagcaaagtaaac
aaaagagttatagaatctttaacaaaagcaggagtttttgatagttttggatactcaaga
aatgcccttttaagccaaatagaaaaaattgttgatggtgctggaaaagcttcaaatgca
aaaaaaatgtctgttggttctctttttggagatagcacagagcttacaagtatagaggta
gaattagacaatttacctgaatactcaaaaaaagagatattagaacttgaaaaagcaagc
cttggtttttatgtttcaggtcatccacttgatgaatataaagacaagatagaaaagata
aactatacactatcatctcaaatagatgagttagcagatggaagtcaaattctaatagtt
ggaaaaatagagacaattactgaaaaaatatcaaaaaagggtagtaagtttggaattgtc
tcaattttggatttccatggaactatcgagtttatgctatttgaagataagttaaaagag
cttcaggaaagttttgatttaaatgaaccaatagcctttaaagtacgaatctcaaaaaat
gaccaatttacacgaatgagcgttttaaaaatagagactattttagatgcccaaaaagag
agagtaaatataaaacaaaaagagatagcagagccacctcttacaattgctttgatgttt
actgaagatgaagattcaatactaaaactatttgatttagtaataaacaaccaagggaaa
agagaactaaaaattatagtaaaatcaaaattagcagacctagagcttgaaagtggtata
aaagtttctagtacagttgaaaaactaattcataatataaaaggagcatatatagtagat
gatgaaaattcttctaacaaatga
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