Aliarcobacter trophiarum: ATR_0318
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Entry
ATR_0318 CDS
T06356
Name
(GenBank) UvrD/REP family helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
atp
Aliarcobacter trophiarum
Pathway
atp03420
Nucleotide excision repair
atp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
atp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ATR_0318
03430 Mismatch repair
ATR_0318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atp03400
]
ATR_0318
Enzymes [BR:
atp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ATR_0318
DNA repair and recombination proteins [BR:
atp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ATR_0318
MMR (mismatch excision repair)
Other MMR factors
ATR_0318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
AAA_11
HHH_5
RNA_pol_Rpb1_3
Motif
Other DBs
NCBI-ProteinID:
AXK48203
UniProt:
A0AAD0QIT6
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All DBs
Position
291543..293597
Genome browser
AA seq
684 aa
AA seq
DB search
MSENLLISLNKSQKSAAEHIDGPLLILAGAGSGKTKTITTRLAYLISIGIDPKSILTLTF
TNKAANEMRDRAFSLLDTNSLNTPPLLCTFHKFGLLFLKFYIGELDRKNNFIIIDSDDKR
RVLKSINKEIPTALLGSEVSKYKNSIMTPSEVKAQAQGKLYSEIADIYQKYEEHLFKNNL
VDFDDLLLLPYKILKNNQKLAELTSQKYQYIMVDEYQDTNELQYRLLRLLCSTHNNLCVV
GDDDQSIYGWRGASIKNILNFNEHFKDAIIVKLEENYRSTDTILQHANALIEHNRDRLGK
KLVGTKDKGNSIKVYESHDENDETRKIVDDIKSLINSGKNPKDIAILFRVNALSRSLEEG
FNKASLSYKLVGGMKFYERTEIKDLIAYFRILTNLSDNFSIKRVINKPKRGIGQTTIDKL
EESAQNQGIGIFELIQKATPEELSAIVGKKNARTIKVFEASILDLRELMAESKMRLLDSF
EEAFDYRASYDNLPDGFERQANIDEFYGYIRDFFIQNPHLDLKDFLNEIALENQSDEYSG
DAVSMMSIHASKGLEFKYIFIIGLEEGFFPIIGDGTDLEEERRLGYVAFTRAMDDLTLSF
VHSRFYKGKRTQLNKSRFLIESGLVKGSLVIEKSSGFKKGDMVNHKIFGQGRVEKAVNAG
KDYKLTINFGGQKRDILSSFVEKN
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaatttattaatatcactaaataagtcacaaaaaagtgcagcagagcatata
gatggacctcttttaattctagcaggtgctggaagtggaaaaacaaaaactattacaaca
agattagcttatttaatctctattgggatagatccaaaatctattttgactttaactttt
acaaataaagcagcaaatgaaatgagagatagagcattttctcttttggatacaaatagt
ttaaatacaccaccacttttatgtacatttcacaagtttggacttctatttttaaagttt
tatataggggaattagatagaaagaataactttataatcatagatagtgatgataaaaga
agagttttaaaatcaatcaataaagagataccaacagcacttttaggaagtgaagtctca
aaatataaaaactctattatgacacctagtgaagtaaaagcacaagcacaaggtaaacta
tatagtgaaattgcagatatttatcaaaaatacgaggagcatctttttaaaaataatctt
gtagattttgatgacttactccttttaccttacaaaattttaaaaaataatcaaaaatta
gcagaacttactagtcaaaaatatcaatatataatggtagatgagtatcaagatacaaat
gaacttcaatatagacttttaagacttctttgttcaactcataataatctttgtgttgtt
ggagatgatgaccaaagtatttatggatggagaggtgcctcaattaaaaatattttaaat
tttaatgagcattttaaagatgcaattatagtaaaacttgaagagaactatagatcaact
gatactattttacaacatgcaaatgctttaatagagcacaatagagatagattaggaaag
aaacttgtaggtacaaaagataaaggtaactctataaaagtctatgaatcacacgatgaa
aatgatgagactaggaaaatagttgatgatataaaaagtttgataaatagtggaaaaaat
ccaaaagatattgcaattttatttagagtaaatgctctaagtcgttctttagaagaggga
tttaataaagcaagtcttagttataaattagttggtggaatgaagttttatgaaagaact
gagataaaagatttaatagcatattttagaattctaacaaatttaagtgataatttttct
ataaaaagagtaataaataaaccaaaaagaggaataggacaaactactattgataaactt
gaagagagtgcacaaaatcaaggaattgggatctttgagttaatacaaaaagcgacacca
gaagagttaagtgcaattgtaggtaaaaaaaatgcaaggacaataaaagtttttgaagct
tcaatattggatttaagggagcttatggccgagtcaaaaatgaggcttttagatagtttt
gaagaagcatttgattatagggcttcatatgataatcttccagatggttttgaaagacaa
gcaaatattgatgagttttatggatatattagagatttttttattcaaaatccacattta
gatttaaaagattttttaaatgagatagcccttgaaaatcaaagcgatgagtatagtgga
gatgctgtatctatgatgagtattcatgcttcaaaaggtttggagtttaaatatatattt
ataattggtttagaagagggatttttcccaataattggggatggaacagatttagaagag
gagagacgattaggttatgtagcttttacaagagctatggatgatttaactctatctttt
gtccactcaagattttacaaagggaaaagaacacaactaaataaaagtagatttttaata
gagagtggtttggttaaagggagtttggtaattgaaaaaagctcaggttttaaaaaaggc
gatatggtaaatcataagatatttggacaaggaagagttgaaaaagcagttaatgctgga
aaagattataagctcacaataaattttggtgggcaaaaaagagatatattatcatctttt
gttgagaaaaactaa
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