Aliarcobacter trophiarum: ATR_0852
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Entry
ATR_0852 CDS
T06356
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
atp
Aliarcobacter trophiarum
Pathway
atp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATR_0852
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atp03019
]
ATR_0852
Messenger RNA biogenesis [BR:
atp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ATR_0852
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Gene cluster
GFIT
Motif
Pfam:
HD
RNase_Y_N
KH_1
KH_KhpA-B
HDOD
KH_2
KH_NusA_C
KH_PNO1_2nd
Cas3_HD
KH_NusA_2nd
TFIIA_gamma_N
Ubiquitin_TPR1
DUF4777
Motif
Other DBs
NCBI-ProteinID:
AXK48720
UniProt:
A0AAD0VMB6
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All DBs
Position
complement(806985..808529)
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AA seq
514 aa
AA seq
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MEILLISVAFGAFSSLVTVFISKKINKAKFEVFIEQAKAKARVIEHEAEVALKDAQLKAK
FECDREFKSARKEYENMLFKIEKKEKELNEHLESELKLIKTQKEEISENNRKIAILKDGI
EEQKRTYEQKTLEAIKILENASGLTKSEAKELMLEKVKEDSRAEIASIFRKKYKLAEQNS
KQEVNNILSQAVTRYAGEFAAERLINNIPLNDEETKGKIIGKEGRNIKALEMLLGVDIII
DDTPNTITVSSFNLYRRAVATRTIQELLEDGRIQPARIEEIYNKVKAEFDKNIQKEGEDV
IMELGIKSMHIELIKLVGRLRYRASYGQNALAHTLEVSHLSGLIAAQMGGDAILARRAGL
LHDIGKALTHEAPGSHVDLGAEICQRFGECETVINAIYAHHGHEEPINVESAAVCAADAL
SAARPGARREVLESFLKRVEEIENITTSKIGVTNAYAINAGREVRVIVNAKLVNDDEAVL
LATQIAKEIEEKVQYPGEIKINVIREIRAESYAR
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggagattttattaatatctgttgcatttggagcttttagttcccttgttacagttttt
atttcaaagaagataaataaagctaagtttgaagttttcatagaacaagcaaaagcaaaa
gcaagagttatagaacacgaagcagaagttgcactaaaagatgctcaactaaaagcaaaa
tttgagtgtgacagagagttcaaaagtgctagaaaagagtatgaaaatatgctttttaag
attgaaaagaaagaaaaagagctaaatgagcatcttgaaagtgaattaaaacttataaaa
actcaaaaagaggagattagtgaaaacaatagaaaaattgcaatcttaaaagatggtatt
gaagagcaaaaaagaacttatgaacaaaaaactcttgaagcaatcaaaatattggaaaat
gctagtggacttacgaaaagtgaagcaaaagagcttatgcttgaaaaggtaaaagaggat
tcaagagcagaaattgcttcaatctttagaaaaaaatataaattagcagagcaaaactca
aaacaagaggtaaataatatcttatctcaagcagttacaaggtatgcaggagagtttgca
gcagaaagacttataaataatattcctttaaatgatgaagagactaaagggaaaattatt
ggaaaagagggaagaaatataaaggctcttgagatgcttctaggagttgatataataata
gatgacactccaaatactataactgtttcatcttttaatctatatagaagagcagttgct
acaagaactatccaagaactactagaagatggcagaattcaaccagctagaattgaagag
atttacaacaaagtaaaagctgaatttgataaaaatatacaaaaagaaggtgaagatgtt
attatggagcttggaatcaagtcaatgcatattgaacttatcaagctagttggaagatta
agatatagagcctcttatggtcaaaatgcattagcccacactttagaagtttctcattta
tctggacttattgctgctcaaatggggggagatgctatattagctagaagagctggttta
ctacatgatattggaaaagctttaacacatgaagctcctggaagccatgttgatttagga
gcagaaatttgtcaaagatttggagagtgtgaaactgtaataaatgcaatttatgctcat
catggacatgaagagccaataaatgttgaaagtgctgctgtttgtgctgcagatgcatta
agtgctgcaagaccaggagcaagaagggaagttcttgaaagttttcttaaaagagttgaa
gagattgaaaatataactacaagtaaaattggagtaactaatgcttatgctataaatgct
ggaagagaagtacgagtaattgtaaatgcaaaacttgtaaatgatgatgaagcagtgctt
ttagctactcaaatagcaaaagagatagaagagaaagttcaatatcctggtgagataaaa
ataaacgtgataagagagatacgtgctgaaagctatgctagataa
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