KEGG   Aliarcobacter trophiarum: ATR_0852
Entry
ATR_0852          CDS       T06356                                 
Name
(GenBank) ribonuclease Y
  KO
K18682  ribonucrease Y [EC:3.1.-.-]
Organism
atp  Aliarcobacter trophiarum
Pathway
atp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:atp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ATR_0852
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atp03019]
    ATR_0852
Messenger RNA biogenesis [BR:atp03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     ATR_0852
SSDB
Motif
Pfam: HD RNase_Y_N KH_1 KH_KhpA-B HDOD KH_2 KH_NusA_C KH_PNO1_2nd Cas3_HD KH_NusA_2nd TFIIA_gamma_N Ubiquitin_TPR1 DUF4777
Other DBs
NCBI-ProteinID: AXK48720
UniProt: A0AAD0VMB6
LinkDB
Position
complement(806985..808529)
AA seq 514 aa
MEILLISVAFGAFSSLVTVFISKKINKAKFEVFIEQAKAKARVIEHEAEVALKDAQLKAK
FECDREFKSARKEYENMLFKIEKKEKELNEHLESELKLIKTQKEEISENNRKIAILKDGI
EEQKRTYEQKTLEAIKILENASGLTKSEAKELMLEKVKEDSRAEIASIFRKKYKLAEQNS
KQEVNNILSQAVTRYAGEFAAERLINNIPLNDEETKGKIIGKEGRNIKALEMLLGVDIII
DDTPNTITVSSFNLYRRAVATRTIQELLEDGRIQPARIEEIYNKVKAEFDKNIQKEGEDV
IMELGIKSMHIELIKLVGRLRYRASYGQNALAHTLEVSHLSGLIAAQMGGDAILARRAGL
LHDIGKALTHEAPGSHVDLGAEICQRFGECETVINAIYAHHGHEEPINVESAAVCAADAL
SAARPGARREVLESFLKRVEEIENITTSKIGVTNAYAINAGREVRVIVNAKLVNDDEAVL
LATQIAKEIEEKVQYPGEIKINVIREIRAESYAR
NT seq 1545 nt   +upstreamnt  +downstreamnt
atggagattttattaatatctgttgcatttggagcttttagttcccttgttacagttttt
atttcaaagaagataaataaagctaagtttgaagttttcatagaacaagcaaaagcaaaa
gcaagagttatagaacacgaagcagaagttgcactaaaagatgctcaactaaaagcaaaa
tttgagtgtgacagagagttcaaaagtgctagaaaagagtatgaaaatatgctttttaag
attgaaaagaaagaaaaagagctaaatgagcatcttgaaagtgaattaaaacttataaaa
actcaaaaagaggagattagtgaaaacaatagaaaaattgcaatcttaaaagatggtatt
gaagagcaaaaaagaacttatgaacaaaaaactcttgaagcaatcaaaatattggaaaat
gctagtggacttacgaaaagtgaagcaaaagagcttatgcttgaaaaggtaaaagaggat
tcaagagcagaaattgcttcaatctttagaaaaaaatataaattagcagagcaaaactca
aaacaagaggtaaataatatcttatctcaagcagttacaaggtatgcaggagagtttgca
gcagaaagacttataaataatattcctttaaatgatgaagagactaaagggaaaattatt
ggaaaagagggaagaaatataaaggctcttgagatgcttctaggagttgatataataata
gatgacactccaaatactataactgtttcatcttttaatctatatagaagagcagttgct
acaagaactatccaagaactactagaagatggcagaattcaaccagctagaattgaagag
atttacaacaaagtaaaagctgaatttgataaaaatatacaaaaagaaggtgaagatgtt
attatggagcttggaatcaagtcaatgcatattgaacttatcaagctagttggaagatta
agatatagagcctcttatggtcaaaatgcattagcccacactttagaagtttctcattta
tctggacttattgctgctcaaatggggggagatgctatattagctagaagagctggttta
ctacatgatattggaaaagctttaacacatgaagctcctggaagccatgttgatttagga
gcagaaatttgtcaaagatttggagagtgtgaaactgtaataaatgcaatttatgctcat
catggacatgaagagccaataaatgttgaaagtgctgctgtttgtgctgcagatgcatta
agtgctgcaagaccaggagcaagaagggaagttcttgaaagttttcttaaaagagttgaa
gagattgaaaatataactacaagtaaaattggagtaactaatgcttatgctataaatgct
ggaagagaagtacgagtaattgtaaatgcaaaacttgtaaatgatgatgaagcagtgctt
ttagctactcaaatagcaaaagagatagaagagaaagttcaatatcctggtgagataaaa
ataaacgtgataagagagatacgtgctgaaagctatgctagataa

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