Aliarcobacter trophiarum: ATR_0982
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Entry
ATR_0982 CDS
T06356
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
atp
Aliarcobacter trophiarum
Pathway
atp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATR_0982 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atp03019
]
ATR_0982 (pnp)
03016 Transfer RNA biogenesis [BR:
atp03016
]
ATR_0982 (pnp)
Enzymes [BR:
atp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
ATR_0982 (pnp)
Messenger RNA biogenesis [BR:
atp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ATR_0982 (pnp)
Transfer RNA biogenesis [BR:
atp03016
]
Prokaryotic type
tRNA degradation factors
ATR_0982 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH_2
CsrA
Spt6_S1
S1_2
RMC1_N
Motif
Other DBs
NCBI-ProteinID:
AXK48846
UniProt:
A0AAD0QK09
LinkDB
All DBs
Position
complement(946704..948848)
Genome browser
AA seq
714 aa
AA seq
DB search
MIIKCELELNQQKEIFEFNKVAKQANGSVLAQMGNAVVMAAVACEFDNPVSEDFTPLTVQ
YIEKTYASAKLPGGFIKREGKPSDFETLTSRVIDRSLRPLFPKGFVYPTTITVMVLSADK
NIDLQTLALNAANAALYTSNLPIKKSVCGVRVGKIANNLVINPAKDDLENSTLDLYVAGS
KDELLMIEMKTISSLNDSLHHTNEMEEETLIEAIAFAQEALKKANLSYEENFEKACKIEA
KVELIEFSIDKEVINYIRDNFSNDIKDAIKKLAKSERAVELKELAKSITKNEYCTKNNID
FNTIFEAVNIVKKELVRTMIVDEKVRADGRGLKDVRAISIETNILPSAHSSCLFTRGETQ
ALVVGTLAGAKDGQMYEVLTDKSTSMENFMVHYNFPGFSVGEAKPIFGVGRRELGHGNLA
RKALESTIDKKFKDTFRIVSEILESNGSSSMATVCGGSLALKAANIPISNLVAGVAMGMV
VEGNKYSILTDIMGLEDHDGDMDFKVAGTKEGITALQMDIKLGGIELDVLKEALLQAKEG
RVHILSIMEEASKNIVSSPALPKIEEFSIDSSKMMVIIGKGGATIKEIIEKYGVNIDLDR
DNGVVKVSGEDSSKIIEASNFIKDLVNNSNSYKSPAKIDFEKLYSTDEIVSGKVERIVDF
GAFILLSKGGEGLLHISKISKQRVEKVSDILSIGQEIEVKVLKIQRDKIELGLN
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgataataaaatgtgaattagagctaaatcaacaaaaagagatttttgaatttaataaa
gttgctaaacaagcaaatggttctgtgttagcacaaatgggaaatgcagttgtaatggca
gctgtagcttgtgaatttgacaatccagtaagtgaagattttactccacttactgttcaa
tatattgaaaaaacttatgctagtgcaaagcttcctggaggatttataaaaagagaagga
aagcctagtgattttgaaacattaacttcaagagtaatagacagaagtttaagaccactt
ttcccaaagggctttgtttatccaacaacaattactgtaatggttttaagtgctgataaa
aatatagatttacaaacattagctttaaatgcagcaaatgcagctctttatacatcaaat
ttacctattaaaaaatctgtttgtggtgtaagagttggaaaaattgccaataatcttgtt
ataaatccagcaaaggatgatttagaaaattctactttggatttatatgtagctggttca
aaagatgaactacttatgattgagatgaaaacaatttcatctttaaatgattctcttcac
catacaaatgagatggaagaagaaactttaatagaagcgatagcttttgcacaagaagct
ttaaaaaaggcaaatttatcttatgaagagaattttgaaaaagcttgtaagatagaagca
aaagtagaattaattgagttttcaatagataaggaagttattaattatataagagataat
ttttcaaatgatataaaagatgctattaaaaaactggcaaaaagtgaaagagcagttgag
ttaaaagaattagcaaaaagcataacaaaaaatgagtattgcacaaaaaataatatagat
tttaatacaatttttgaagctgttaatatagtaaaaaaagaacttgttcgtacaatgatt
gtagatgaaaaagtaagagcagatggaagaggtcttaaagatgtaagagcaatatctata
gaaacaaatattttaccatcggctcactcatcttgtctatttacaaggggtgaaactcaa
gctttagttgttggaactctagctggtgcaaaagatggacaaatgtatgaagttttaaca
gataaatcaacatctatggaaaactttatggttcactacaattttccaggatttagtgtg
ggagaggcaaaacccatttttggagtaggaagaagagagctagggcatggaaatttagct
agaaaagcacttgaatctacaatagataaaaaatttaaagatacttttagaatagtatct
gaaattttagaatcaaatggttcttcttctatggcaactgtttgtggtggttcattagct
cttaaagctgcaaatattccaatatcaaacttggtagctggtgttgctatgggaatggtt
gttgaaggtaataaatattcaatccttactgatattatggggcttgaagatcatgatgga
gatatggattttaaagttgctggaacaaaagaggggattacagctttacaaatggatata
aaacttggagggattgaattagatgtcttaaaagaggctcttttacaagcaaaagagggg
agagttcatattttaagtattatggaagaagccagtaagaatatagtttcaagtccagcc
ttaccaaaaattgaagagttttctatagatagttcaaagatgatggttattattggaaaa
ggtggagctactattaaagaaattattgaaaaatatggtgtaaatatagatttagataga
gacaatggagttgtaaaagtaagtggagaagatagttctaaaataatagaagctagtaat
tttataaaagatctagtaaataactcaaactcatacaaatcaccggcaaaaattgatttt
gaaaagctatatagtacagatgagattgtttctgggaaagttgaaagaatagttgatttt
ggtgcatttatacttctttcaaaaggaggagaagggcttttacatatatctaaaatttca
aaacagagagtagaaaaagtaagcgatattttgtctataggacaagagatagaggtaaaa
gttctgaagatccaaagggataaaatagagctaggtttaaattaa
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