Aliarcobacter trophiarum: ATR_1396
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Entry
ATR_1396 CDS
T06356
Symbol
groEL
Name
(GenBank) 60 kD chaperonin (cpn60)
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
atp
Aliarcobacter trophiarum
Pathway
atp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATR_1396 (groEL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atp03019
]
ATR_1396 (groEL)
03110 Chaperones and folding catalysts [BR:
atp03110
]
ATR_1396 (groEL)
03029 Mitochondrial biogenesis [BR:
atp03029
]
ATR_1396 (groEL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
atp04147
]
ATR_1396 (groEL)
Enzymes [BR:
atp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
ATR_1396 (groEL)
Messenger RNA biogenesis [BR:
atp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
ATR_1396 (groEL)
Chaperones and folding catalysts [BR:
atp03110
]
Heat shock proteins
HSP60 / Chaperonin
ATR_1396 (groEL)
Mitochondrial biogenesis [BR:
atp03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
ATR_1396 (groEL)
Exosome [BR:
atp04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
ATR_1396 (groEL)
Exosomal proteins of other body fluids (saliva and urine)
ATR_1396 (groEL)
Exosomal proteins of breast cancer cells
ATR_1396 (groEL)
Exosomal proteins of colorectal cancer cells
ATR_1396 (groEL)
Exosomal proteins of bladder cancer cells
ATR_1396 (groEL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
ParM_N
Motif
Other DBs
NCBI-ProteinID:
AXK49253
UniProt:
A0AAD0QKL4
LinkDB
All DBs
Position
complement(1344659..1346290)
Genome browser
AA seq
543 aa
AA seq
DB search
MSKEIIFSDNARNRLFAGVEKLADAVKVTMGPRGRNVLLQKSFGAPTITKDGVSVAREIE
LADTLENMGAQLVKEVASKTADEAGDGTTTATVLAHSIFKEGLRNVTAGANPISLKRGMD
KACEAILVELKKASRVVENKTEIEQVATISANSDSAIGKMIAEAMEKVGKDGVITVEEAK
GISDELDVVEGMQFDRGYLSPYFVTNPEKMTTEFDNPFILLYDKKISSLKELLPILEGVN
KAGRPLLIVAEDVDGEALATLVVNRLRGALQIAAVKAPGFGDRRKAMLEDIAVLTGGTVI
SEEMGMKLETTDLSALGVASKIVIDKDNTTIVDGNGTKDAVLARVNQIKAEIANTTSDYD
REKLQERLAKLSGGVAVIKVGAATETEMKEKKDRVDDALSATRAAVEEGIVIGGGAALIR
AAAKVKLELKEDELIGANIVLRAIKAPLKQIALNAGYDAGVVANEVEKSSNDNLGFNAAS
GEYVDMFEAGIVDPAKVERVAMQNAVSVASLLLTTEATVTEVKEDKVPAMPDMSGMGGMP
GMM
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagagattatatttagtgataatgcaagaaatagactttttgcaggtgttgaa
aaattagcagatgctgtaaaagtgacaatgggacctagaggaagaaatgttttattacaa
aaatcttttggtgcaccaacgattacaaaagatggtgtaagtgtagcaagagagattgaa
cttgctgatactttagagaatatgggtgctcaacttgtaaaagaggtagctagtaaaaca
gctgatgaagctggagatggtacaacaacagcaacagttttagctcactcaatctttaaa
gagggtcttagaaatgtaacagctggtgcaaatccaatatctttaaaaagaggaatggac
aaagcttgtgaagcaattttagttgaacttaaaaaagcttcgagagttgttgaaaataaa
actgaaattgagcaagttgctacaatttctgcaaactctgatagtgcaattggaaagatg
attgctgaagctatggaaaaagttgggaaagatggagttattacagttgaagaagcaaaa
ggaatttctgatgaactagatgttgttgaaggaatgcagtttgatagaggatatttaagt
ccatattttgtaacaaatccagaaaaaatgacaacagagtttgataatccttttatcctt
ttatatgataaaaaaatctcatctttaaaagagctattaccaattcttgaaggtgtaaat
aaagctggacgtccacttttaattgtagctgaagatgtagatggagaagctcttgcaact
ttagttgtaaatagattaaggggtgcattacaaattgctgctgttaaagctccaggtttt
ggtgatagaagaaaagctatgcttgaagatattgctgttttaacaggtggaacagttatt
tctgaagagatgggaatgaaacttgaaactactgatttaagtgcattaggagttgcttct
aaaattgtaatagataaagataacacaacaatagttgatggaaatggaactaaagatgca
gttttagcaagagtaaatcaaattaaagcagagattgcaaatacaacaagtgattatgat
agagaaaaacttcaagaaagacttgcaaaacttagtggcggagttgctgttattaaagtt
ggtgctgcaactgaaactgaaatgaaagagaaaaaagatagagttgatgatgcattaagt
gcaacaagagctgctgttgaagaaggaattgtaattggtggaggagctgcattaataaga
gctgctgcaaaagtaaaactagagctaaaagaagatgaattaattggtgcaaatatcgtt
ttaagagctattaaagcaccattaaaacaaattgctttaaatgctggatatgatgctggt
gttgttgcaaatgaagttgaaaaatcttctaatgataatttaggatttaatgcagcaagt
ggagagtatgtagatatgtttgaagctggaattgtggatcctgcaaaagtagaaagagtt
gctatgcaaaatgcagtatctgtagcttcacttcttctgacaacagaagcaacagtaact
gaagttaaagaagataaagttcctgcaatgccagatatgagcggtatgggtggaatgcct
ggtatgatgtaa
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