Actinomarinicola tropica: GH723_07765
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Entry
GH723_07765 CDS
T06914
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
atq
Actinomarinicola tropica
Brite
KEGG Orthology (KO) [BR:
atq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atq03019
]
GH723_07765 (hrpA)
Enzymes [BR:
atq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GH723_07765 (hrpA)
Messenger RNA biogenesis [BR:
atq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GH723_07765 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
AAA_22
DEAD
HA2_N
AAA_19
nSTAND3
AAA_16
NACHT
SLFN-g3_helicase
PhoH
ABC_tran
AAA_30
T2SSE
Motif
Other DBs
NCBI-ProteinID:
QGG95009
UniProt:
A0A5Q2RDP8
LinkDB
All DBs
Position
complement(1573830..1577576)
Genome browser
AA seq
1248 aa
AA seq
DB search
MSRLDPAEIERRRALLPTPRYPEELPISQRRGDLLDALRDNQVVVVAGETGSGKSTQLPK
LCLELGRGVEGLIAHTQPRRIAARSIAERMAEELGTEVGGLVGYAVRFTDEVGPDTLLKL
MTDGILLAEIQRDRDLRRYDTIIVDEAHERSLNIDFLLGYLRQLLPRRPDLKVVITSATI
DTERFSQHFGGAPIVEVSGRTYPVEIRYRPLEDPDDVEAEVRDQPQGIVDAVEELRREGP
GDVLVFCAGERDIRDAADALRDRAFPDTEILPLYARLSAAEQHRVFAPHTGRRIVLATNV
AETSLTVPGIRSVVDPGNARISRFNHRTKVQRLPIEDVSQASADQRAGRCGRIGPGTCIR
LYSEESYDARPRFTEPEIQRTNLASVILQMAAIGLGEIERFPFVDPPDARAVRDGIALLV
ELGAVDPEHEGTRRWLTPLGRQLARLPLDPRLGRMVLAAHESGCLHEVAVIAAGLSIIDP
RERPSGKEQEAAQLHARFAHPDSDFLSLLALWEHVREVRRDRSSNQWRKQLKAEHLNVMR
VREWQDVYAQLRQVCGQMGMRMRHGGEEPSAATIHQALLTGLLSHVGMRIGDTRDYRGAR
GATFAIAPGSVLSRARPRWVMAGELVETNRMWGRMVARIQPEWLESAGAHLVKRSYGEPW
WDAERGAASTTERVTLFGLPVVAGRTTNLARVDPERARELVIWHALVHGEWTTHHRFVER
NRARVEEVHDLEARARRDLLLPDEALFDWFDERVPDHVVSVRSFDKWWKGARRDTPDLLD
VPLDVLVSGSDAPDPDDFPDEWRHGDLTLDVAYEFDPSSLTDGAVIEVPLAALNQIDPDA
FEWSVPGVRPLLVDALVRSLPKSIRRSLVPVPDTVAAVLDHLDTAAGDGLLRALARELRR
TTGVEVTPEDFDLDKVPDHLRPTVRVVDEAGRPIAQGKSVEALGDLLDRQVRTAISQSGP
SIERTGLTDWPGGDLPSVIDTTGAGHVVRAYPALVDEGDTVAVRLLPSQDEQWEAMWVGT
RALLGRSVPAVVRAVTRMLTNRSRLALAVSPWRSEQDWALDVVGAAVDGILDEQGGPSWT
EEGWRRLRAATAEQLPKVLVDVAPVAVDVLDLIGRIVPRLDEMDQKALAPSVADVREQLG
RLVYPSVLTSIGAPRVADLRRYLRAIEHRLDKLPDGLRKDQERMVAVRRLEQELDALAER
VPASPELDRATWMLQELRVASFAQHLGTTEPVSDKRVRAALAAAAGQA
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgactcgaccccgccgagatcgagcggcggcgcgccctgctgccgacgccgcgc
taccccgaggagctgccgatctcgcagcgccgaggggacctcctcgacgcgctgcgcgac
aaccaggtcgtcgtcgtcgccggggagacggggtcgggcaagtccacgcagctgcccaag
ctgtgcctcgagctcggtcgcggcgtcgagggactgatcgcccacacccagccccgccgc
atcgccgcccggtcgatcgccgagcggatggccgaggagctcgggaccgaggtcggcggt
ctcgtcggctacgccgtgcggttcaccgacgaggtcggacccgacaccctgctgaagctg
atgaccgacggcatcctgctcgccgagatccagcgggacagggacctgcggcgctacgac
acgatcatcgtggacgaggcccacgagcgcagcctcaacatcgacttcctgctcggctac
ctccgccagctcctcccccgccgacccgacctgaaggtcgtcatcacctcggccacgatc
gacaccgagcgcttctcgcagcacttcggcggggcacccatcgtcgaggtgtcgggccgc
acctaccccgtcgagatccgctaccggccgctcgaggaccccgacgacgtcgaggccgag
gtgcgcgaccagccccaggggatcgtcgacgccgtcgaggagctgcgccgtgaggggccg
ggcgacgtgctcgtcttctgcgccggcgagcgtgacatccgcgacgccgccgacgccctc
cgcgaccgggcgttccccgacaccgagatcctccccctctacgcgcggctgtcggcggcc
gagcagcaccgcgtgttcgcaccccacaccgggcggcgcatcgtcctcgccaccaacgtg
gccgagacctccctcaccgtccccggcatccgctcggtcgtcgatcccggcaacgcccgc
atctcacgcttcaaccaccgcacgaaggtgcagcgcctcccgatcgaggacgtctcccag
gcctcggccgaccagcgggccggccggtgcggccgcatcgggccgggcacctgcatccgg
ctctacagcgaggagagctacgacgcgcggccgcggttcaccgaacccgagatccagcgc
accaacctggcgtcggtcatcctccagatggccgccatcggactgggcgagatcgagcgg
ttcccgttcgtggacccgcccgatgcgcgcgcggtgcgcgacggcatcgcgctcctcgtc
gagctcggcgcggtcgaccccgagcacgaggggacgcgacgctggctcaccccgctcggc
cggcaactggctcgtctccccctcgacccccgcctcggtcgcatggtcctcgccgcccac
gagtccggctgcctccacgaggtcgccgtgatcgccgccgggctctcgatcatcgacccc
cgcgagcgcccgagcgggaaggagcaggaggccgcgcagctccacgcccgcttcgcccac
cccgactcggacttcctctcgctgctcgccctgtgggagcacgtgcgcgaggtgcggcgg
gaccgctcgtcgaaccagtggcgcaagcagctgaaggccgagcacctgaacgtcatgcgc
gtccgcgagtggcaggacgtctacgcccagctgcgccaggtctgcggccagatggggatg
cggatgcgccacggcggcgaggagccgagcgccgcgacgatccaccaggcgctcctcacc
gggctcctctcccacgtcggcatgcgcatcggcgacacgcgcgactaccggggagcccgc
ggcgccaccttcgcgatcgcccccgggtcggtgctgagccgggcccgaccccgttgggtg
atggccggcgagctcgtcgagaccaaccggatgtggggccggatggtcgcccgcatccag
ccggagtggctcgagtcggccggcgcccacctcgtgaagcggagctacggcgagccgtgg
tgggacgccgagcgcggggccgcctcgaccaccgagcgcgtcacgctcttcgggctgccc
gtcgtcgccggtcgcacgaccaacctcgcccgcgtcgacccggagcgggcccgtgagctc
gtgatctggcacgccctcgtgcacggcgagtggaccacgcaccaccgcttcgtcgagcgc
aaccgcgcccgggtcgaggaggtccacgacctcgaggctcgcgcccggcgcgacctgctc
ctccccgacgaggcgctgttcgactggttcgacgagcgggtgcccgaccacgtggtgtcg
gttcgctccttcgacaagtggtggaagggcgcccggcgggacaccccggacctgctggac
gtccccctcgacgtcctcgtctcggggtccgacgcgcccgatcccgacgacttccccgac
gagtggcgccacggcgacctcaccctcgacgtcgcctacgagttcgacccgtcctcgctg
accgacggcgcggtcatcgaggtcccgctcgccgcgctgaaccagatcgaccccgacgcg
ttcgagtggagcgtcccgggcgtccgcccccttctcgtcgacgcactcgtgcggtcactg
ccgaagtcgatccgtcggagcctcgtccccgtgcccgacacggtggccgcggtgctcgac
cacctcgacaccgccgcaggggacggcctgctgcgcgcgctggcccgcgagctgcggcgc
accaccggcgtggaggtcacccccgaggacttcgacctcgacaaggtgccggaccacctg
cgtccgaccgtgcgcgtcgtggacgaggcgggccgaccgatcgcccagggcaagagcgtc
gaggccctcggcgacctgctcgatcgccaggtgcgcacggccatctcgcagtccggtccg
tccatcgagcggaccggcctcaccgactggccgggcggtgatctcccctccgtgatcgac
acgaccggggccggccacgtggtgcgggcctacccggccctcgtcgacgagggcgacacc
gtcgccgtgcgcctcctccccagccaggacgagcagtgggaggcgatgtgggtcggcacg
cgcgcgctgctgggacgctcggtccccgccgtcgtccgcgcggtcacgcggatgctgacc
aaccggtcgcgtctggcgctcgccgtctcgccgtggcgctcggagcaggactgggccctc
gacgtggtgggcgccgcggtcgacggcatcctcgacgagcagggcggaccgtcctggacc
gaagaggggtggcgtcggctccgcgccgcgaccgccgagcagctgccgaaggtgctggtc
gacgtggcgcccgtcgcggtcgacgtgctcgacctcatcgggcggatcgtcccgcgcctc
gacgagatggaccagaaggcgctggcgccgtcggtcgccgacgtgcgcgagcagctcggt
cggctggtctacccgtccgtcctcacctcgatcggtgcgccacgggtggccgacctgcgc
cggtacctgcgggcgatcgagcaccggctcgacaagctccccgacgggctgcgcaaggac
caggagcgcatggtggcggtacgtcggctcgaacaggagctggacgccctggccgagcgc
gtccccgcctcgcccgagctcgaccgtgccacctggatgctccaggagctgcgggtcgcc
agcttcgcccagcacctcggcaccaccgaaccggtgagcgacaagcgcgtgcgcgcggct
ctcgccgcggccgccggtcaggcgtag
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