Actinomarinicola tropica: GH723_11250
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Entry
GH723_11250 CDS
T06914
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
atq
Actinomarinicola tropica
Pathway
atq02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
atq00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GH723_11250 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atq03021
]
GH723_11250 (rpoD)
Transcription machinery [BR:
atq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GH723_11250 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
HTH_20
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
QGG95624
UniProt:
A0A5Q2RJE0
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All DBs
Position
complement(2283574..2284860)
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AA seq
428 aa
AA seq
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MTERTQPTSPWVEVPAEELQRLIERGRSHGTLHSDDVMAVFKDVDPTPDNIVRIRDHFAS
FGITIDESVDELHEDHDVDHAPPPEDDAAKERAARIAARIAARPTRAIRAPSDTGGGSSD
SVRLYLKEIGRVPLLTGPEEVSLAKRIEAGKFAKERLDAADDPENPDREELDATTRRQLT
RTAKDGDRAREALTQANLRLVVSIAKRYVGRGMLILDLIQEGNLGLMRAVEKFDYTKGFK
FSTYATWWIRQAITRAIADQARTIRIPVHMVESINKVHRVQRQMLQQLEREPTVEELATE
VDMTPQRVREILRISQDPLSLNSPVGEEDDSNLGDFIEDLQADAPAEMAARRMLNEAVLA
ALEELNEREQQVVRLRFGLEDGQARTLEEVGREFGVTRERIRQIESKTLAKLRHPHRSQK
LRDYLDSE
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgactgagcgcactcaaccgacctccccgtgggtcgaggtcccggctgaggagctccag
cggctgatcgaacggggccgctcccacgggacgctccacagcgacgacgtcatggccgtg
ttcaaggacgtggaccccacgccggacaacatcgtccgcatccgcgaccacttcgcctcg
ttcggcatcaccatcgacgagagcgtcgacgagctccacgaggaccacgacgtcgaccac
gcgcccccgccggaggacgacgcggccaaggagcgcgccgcgcgcatcgcggcgcgcatc
gcggcacgtccgacgcgtgccatccgcgccccgtccgacactggcggcggcagctccgac
tcggtgcggctctacctgaaggagatcggtcgggtcccgctcctcaccggccccgaggag
gtgtcgctcgcgaagcgcatcgaggccggcaagttcgcgaaggaacgcctcgacgccgcc
gacgacccggagaaccccgaccgcgaggagctcgacgccaccacgcggcgccagctcacc
cgcaccgccaaggacggcgaccgggcccgcgaagcgctcacccaggccaacctccgcctc
gtggtgtcgatcgccaagcgctacgtcggccgcggcatgctcatcctcgacctcatccag
gagggcaacctcgggctgatgcgtgcggtcgagaagttcgactacaccaagggcttcaag
ttctccacctacgccacgtggtggatccgccaggccatcacccgggccatcgccgaccag
gcccgcaccatccgcatcccggtccacatggtcgagtcgatcaacaaggtccaccgggtg
cagcgccagatgctccagcagctcgagcgcgagcccaccgtcgaggagctcgccaccgag
gtcgacatgaccccgcagcgggtgcgggagatcctgcgcatctcccaggacccgctctcc
ctcaactccccggtgggggaggaggacgactccaacctcggtgacttcatcgaggacctc
caggccgacgccccggcggagatggccgcccgccgcatgctcaacgaggccgtcctcgcc
gcgctcgaggagctcaacgagcgcgagcagcaggtcgtccggctccgcttcgggctcgag
gacggccaggcccgcaccctcgaggaggtcgggcgggagttcggcgtcacccgtgagcgc
atccgccagatcgagtcgaagaccctggccaagctgcgccacccccaccgcagccagaag
ctgcgggactacctcgacagcgagtag
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