Amborella trichopoda: 18421536
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Entry
18421536 CDS
T02990
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X2
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
atr
Amborella trichopoda
Pathway
atr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18421536
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18421536
03012 Translation factors [BR:
atr03012
]
18421536
Enzymes [BR:
atr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
18421536
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
18421536
Translation factors [BR:
atr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
18421536
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
dsrm
AAA_22
ATPase
AAA_19
AAA_23
nSTAND3
ABC_tran
Motif
Other DBs
NCBI-GeneID:
18421536
NCBI-ProteinID:
XP_006826345
UniProt:
W1NDI4
LinkDB
All DBs
Position
Unknown
AA seq
1139 aa
AA seq
DB search
MYPLAHILKFTKLGPFRLHVYLSGEKRIESGLRFIASGSQQYCNYALEQFSDDEYECEFE
NHKASSSVANIDEWKWKLSLLSRNQEEQEIISRDKRDRRDYEQISNLAKRMGLYSEQYGK
VIVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEHLDRMELNSDNLGDGAVEK
AQDNLSEDASPEQSHDPFLDGSIIEKVLQRKSLRMRNLQRSWQESPEGQRMLSFRKSLPA
YKEKERLLAGIARNQVTVISGETGCGKTTQLPQYILESEIESGRGAFCSIICTQPRRISA
MAVAERVATERGDQLGESVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDRNLNGITHVF
VDEIHERGMNEDFLLIVLKDILPRRRDLRLILMSATLNAELFSNFFGGAPTVHIPGFTYP
VRVHFLEDILEITGYKLTSFNQVDDYGQEKLWKTQRQLMSRKRKNQLTALVEDALSKERF
ENYSSRARDSLACWNSDCIGFNLIEAVLCHICRKERPGAVLVFMTGWDDISCLRDQLKAH
PLLGDPNRVLLVTCHGSMATSEQKLIFERASPNIRKIVLATNMAEASITVNDIVFVVDCG
KAKETTYDALNNTPCLLPSWISRASARQRRGRAGRVQPGECYHLYPRCVYDAFAEYQLPE
LLRTPLNSLCLQIKSLLLGTIGEFLSAALQPPEPLAVQNAVEFLKVIGALDEKENLTNLG
RYLSMLPVDPKLGKMLVMGAVFRCLDPILTVVSGLSVRDPFLLPQDKKDLAGTAKSRFSA
KDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTFQAIHSLRKQFNHILKDAGLLE
GDLSTCNQLSHDQSLVRSIICSGLFPGIVSVVHREKSMSFKTMDDGQVLLYANSVNSRYH
TIPYPWLVFSEKVKVNTVFIRDSTGVADSVLMLFGGNLVRGAAAGHLKMLDGYIDLFLEP
SLADCYLKLKEELENLIQQKLEDPSVDIHKSGKYLMRAIQELVSSDNCEGRFVFGRETTK
IRAPADGPRTRDGANPKSLLQTLLMRAGHSPPRYKTKHLKTNEFRALVEFKGMQFVGKPK
KNKQLAERDAAIEALGWLTHTSDKTKNDDDDDDNEEPLDVTDNMLKLLGKRRRARRGNG
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgtaccctttagctcatatcctgaaatttacaaaattgggaccttttaggctgcatgtt
tacttaagtggcgagaaaaggatcgagagtggattgagattcattgcttcgggaagtcag
cagtactgtaactatgctcttgagcagttttctgatgacgagtatgagtgcgagttcgaa
aatcacaaggcttcttcctctgtggcaaacattgatgagtggaaatggaaactcagttta
ctctcgcgtaatcaagaagaacaggagattatttctagagataaaagagacagacgagac
tatgagcaaatatctaaccttgccaaaaggatgggcctttacagtgaacaatatgggaaa
gtgattgttgcaagcaaggttcctttgcccaattataggccggaccttgatgacaagaga
ccccaaagagaggttgttattccccttagtttgcagaggagggtagagggtttactccaa
gaacatcttgataggatggagttaaattctgacaatctcggtgacggtgcagtcgagaaa
gcacaagataatctgagtgaagatgcatcgcctgagcaaagccatgatccttttctcgat
ggttccatcatagaaaaggtcctacagcgaaaaagtttgagaatgcgcaatttacagcga
tcttggcaggaatcacctgagggccaaaggatgctatctttccggaaatctcttcctgct
tacaaggaaaaggagagattgcttgcagggatagcacgaaatcaggtcacagtcatttct
ggtgagactggatgcggtaaaaccactcagcttcctcaatatattttagagtctgagata
gaatctggtcgtggggcattctgtagcatcatttgtacacaacctcgaagaatatctgcc
atggctgttgcagaaagagttgctacggagagaggagatcaactaggagaatctgttggt
tacaaagttcggttagaaggaatgaaagggaaaaacacgcatctgcttttttgtaccagt
ggtatcttattgaggaggttgctttcggaccgcaatttaaatggtataacacatgttttt
gtggatgaaatccatgaacgaggaatgaacgaagacttcttgttgattgttttaaaggat
attcttccacgccgccgagacctgagattgatattaatgagtgccactttgaatgcggag
ttgttctcaaacttttttggtggagctccaactgtccacattccaggatttacctatcct
gtaagagtacatttcttagaagatattttagagatcactgggtataaactgacatcattt
aatcaagtggatgactatggccaagagaagttgtggaagacacagagacaactaatgtct
cggaagaggaaaaatcaacttactgctcttgtggaggatgctctttcaaaggaacgtttt
gaaaattatagttcaagggcacgcgattctttggcttgttggaattctgattgtatagga
ttcaatctcattgaggctgttttgtgccatatatgtcgaaaagaaagaccaggtgctgtg
ttagttttcatgactggttgggatgatattagttgtttgagagatcaacttaaggcacat
cccctactaggagatccaaacagagttttattagttacgtgccatggatcaatggctact
tctgagcagaaactcatctttgaaagggcttcaccaaatatacgtaaaattgttcttgct
acaaatatggcagaggcaagcataacagtcaatgatattgttttcgttgttgattgtgga
aaagcaaaggagactacttatgatgctttaaacaatactccatgtctcttaccctcttgg
atatcacgggcatcggctagacagagaaggggtagagctgggcgtgttcagccaggagag
tgctaccatctatacccaagatgtgtatatgatgcttttgcggaatatcagcttccagaa
cttctcagaactcctttgaattctctttgcttgcaaataaaaagtttgctacttgggacc
ataggggagtttttgtcagctgctctccagcctcctgaacctcttgctgtccaaaatgct
gttgaatttctgaaagtaattggtgcattagatgagaaggagaacctaacaaatcttggg
agatatttatcaatgcttccagttgatccaaaacttgggaagatgctcgtcatgggtgct
gtatttcgatgcctcgatcccattctcacggtggtttctggtttgagtgttagggatcca
tttctgctacctcaggacaagaaagatctagcagggactgcaaaatcgagattctcggca
aaggactacagtgaccatatggcccttgtccgtgcatatgaggggtggaaagacgcagag
agagaaggctcggcttatgaatattgctggaggaattttctctcagctcaaacattccag
gctatccattctcttcgaaagcaattcaaccacattctcaaagatgctggcttattagaa
ggagacttgagcacgtgtaatcaattgagccatgatcaatcattggttcgctcaatcatt
tgttctggcctatttcctggtattgtgtctgttgtgcatagagagaagtcgatgtccttc
aaaactatggatgatgggcaggttctactgtatgcgaattcagtaaattcccgctatcat
acgatcccttacccttggttggtatttagcgagaaagtcaaagtgaacactgtatttata
cgtgattctactggtgtcgcggactccgtactgatgctttttggtggcaatcttgtccgt
ggagctgcggccggacacttgaagatgttggatggttatatcgatttattcctcgagcca
agcctggcagactgctatttaaaactcaaggaggagcttgaaaaccttatccagcagaag
cttgaggatccaagcgtggacatccacaaatcaggcaaatacttgatgcgtgcaatacaa
gagctcgtatcatccgataattgtgagggccggtttgttttcggccgtgagaccacgaaa
attagggcccccgctgatggcccacgaaccagagatggtgcaaaccccaaaagcttactc
caaaccctactcatgagagcaggtcatagcccaccaagatacaagaccaaacacctcaaa
accaatgagtttagagctcttgtagaatttaagggaatgcaatttgtgggcaagccaaag
aagaacaaacaacttgctgagagagatgcagccattgaggctttgggttggctaactcat
acatctgataaaaccaagaatgatgatgatgatgatgacaatgaggaaccccttgatgtc
actgataacatgctcaagttgttgggtaagcgaaggcgggcccggaggggcaatgggtga
DBGET
integrated database retrieval system
