Amborella trichopoda: 18421547
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Entry
18421547 CDS
T02990
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
atr
Amborella trichopoda
Pathway
atr00040
Pentose and glucuronate interconversions
atr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
18421547
Enzymes [BR:
atr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
18421547
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
18421547
NCBI-ProteinID:
XP_006826355
UniProt:
W1NDI6
LinkDB
All DBs
Position
Unknown
AA seq
479 aa
AA seq
DB search
MEKLLARIILVIMAIAFILMIVRQYQSESRAKDERERERERERQASNGTSRYQVRSNLHY
DSVLQTRAHRSLVDDSVLEARAHQSWLEAQAAYEPDPEAVSRNLTHLVHMELPSGNHMRR
QLGRRWHGPCVATNPIDRCWRCDQKWHTNRKKLADCAMGFGQQALGGKYGRYYVVTDPSD
NDLLNPKPGTLRHAVIQNEPLWIIFQRDMVIKLTEELMVNSFKTVDGRGANVHIAYGACI
TIQYVKNVIIHGLHIHDCKAGNGGMIRDSEDHFGIRTRSDGDGISIYGSTNVWVDHNTLS
KCQDGLVDAIMGSTAITISNNHFSKHDEVLLLGGSDLYPMDKVMQVTVAFNHFGKGLSQR
MPRCRFGYFHVVNNDYTHWGKYAIGGSMNPTILSQGNRFVAPLDPYFKEITKRFGPDLDW
GSWNWKSEGDLFKNGAIFTQSGNGRKYERKISIRAKPGSYVGILTRFSGALKCKTGTPC
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggagaagcttttggcgagaatcattctagttataatggccattgcgtttattttaatg
attgtgaggcaataccaatcagaaagcagagccaaagatgaaagagaaagggaacgggaa
cgggaacgtcaggccagcaatggcaccagtcgttaccaagtgaggagcaatctacattat
gactcggtcctacagactcgagcccatcgatctctggtcgatgactcagtcttggaggct
cgagctcatcaatcttggcttgaggcccaagcagcatacgagcctgaccctgaggccgtt
tcccgcaacctcacccaccttgtccatatggagttgccctctggaaaccacatgaggcgg
caacttggccggcgatggcacgggccatgcgtggccaccaacccaatcgacaggtgctgg
cggtgcgatcagaaatggcacacaaatcgcaaaaagctcgccgattgcgcaatggggttc
ggacaacaagccctaggaggaaagtatggcagatactatgttgtcacagatccttcagac
aatgacctgctaaaccctaaaccaggcacccttcgccatgctgtgatccaaaatgagccc
ctatggatcatatttcagcgtgatatggtcataaaactaactgaagagttgatggtcaat
agtttcaagactgtagatgggagaggagcaaatgtgcacatagcctatggagcatgcatc
acgattcaatatgtgaaaaatgttataatccatggtctccatatacatgattgcaaggct
gggaatgggggaatgataagggactctgaggaccattttggaattaggaccaggagtgat
ggggatggtatctctatatatgggtctaccaatgtttgggtggatcacaacacattgagt
aagtgccaagatgggcttgtggatgccatcatgggctctacggctatcaccatatctaac
aatcatttttccaaacacgatgaggtgctattgttgggtggaagtgatctttacccaatg
gacaaggtcatgcaagtgactgtggccttcaatcactttggcaaagggcttagtcaaaga
atgcctcgttgtagatttggatactttcatgttgtcaacaatgattatacacattggggc
aaatatgccataggagggagcatgaaccccacaatactaagccaaggcaatcgctttgtt
gcccctcttgatccatactttaaggagataactaagagatttggaccagatttggattgg
ggaagctggaattggaaatcagagggtgatttatttaagaatggtgccattttcacacaa
tcgggaaatgggagaaaatatgaaaggaaaatcagcatacgtgccaagccaggatcttat
gtaggcatccttacacgcttctctggtgctttgaagtgcaagacagggacaccatgttga
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