KEGG   Amborella trichopoda: 18421598
Entry
18421598          CDS       T02990                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
atr  Amborella trichopoda
Pathway
atr03020  RNA polymerase
atr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:atr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    18421598
  09124 Replication and repair
   03420 Nucleotide excision repair
    18421598
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:atr03021]
    18421598
   03019 Messenger RNA biogenesis [BR:atr03019]
    18421598
   03400 DNA repair and recombination proteins [BR:atr03400]
    18421598
Transcription machinery [BR:atr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     18421598
Messenger RNA biogenesis [BR:atr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     18421598
DNA repair and recombination proteins [BR:atr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      18421598
SSDB
Motif
Pfam: SHS2_Rpb7-N S1
Other DBs
NCBI-GeneID: 18421598
NCBI-ProteinID: XP_011626898
LinkDB
Position
Unknown
AA seq 184 aa
MFFHINLERNMQLHPRHFGPHLRDKLIAKLMKDVEGTCSGRHGFVVAITGVDNIGKGLIR
DGTGFVTFPVKYQCVVFRPFKGEILEAXVRMVTWKILXYVQMGFFAEAGPVQIFVSNHLI
PDDMEFQSGDVPNYMTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP
GATA
NT seq 555 nt   +upstreamnt  +downstreamnt
atgttcttccacataaatttggagcgtaacatgcagttgcatcctcgacactttggtccc
cacctaagagacaagcttattgccaagctcatgaaagatgtcgaaggtacttgcagtggt
cggcatggctttgttgtggcgataactggagttgataacattggtaaagggctgattcga
gatgggactgggttcgtcacattcccagttaaatatcaatgtgtggtttttagaccattc
aagggggagatccttgaagcagnagttcgcatggtaacttggaaaattttgtgatatgtg
cagatgggtttttttgctgaagcagggcctgtgcagatttttgtttcaaatcatcttatt
cctgatgatatggaatttcaatctggagacgtgcccaactatatgacgtcagatggatcg
gtcaagattcaaaaggatagtgaagtgcggctgaagattatcgggacacgtgttgatgct
acagaaatattctgcatcggtaccataaaggatgatttcttgggagttataaatgatcca
ggcgcaaccgcatag

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