KEGG   Amborella trichopoda: 18421706
Entry
18421706          CDS       T02990                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3 isoform X2
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
atr  Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:atr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:atr03009]
    18421706
Ribosome biogenesis [BR:atr03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    18421706
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd EIF3I WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_EML NBCH_WD40 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_HPS5 Beta-prop_DCAF4 Beta-prop_WDR90_POC16_2nd Beta-prop_VPS8 Beta-prop_TEP1_C WDR54 Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_IP5PC_F Beta-prop_SCAP Beta-prop_SPT8 PROPPIN VPS8_N Beta-prop_WDR75_1st Beta-prop_LRRK2 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_WDR75_2nd Beta-prop_DCAF12 Ge1_WD40 Peptidase_Prp PQQ
Other DBs
NCBI-GeneID: 18421706
NCBI-ProteinID: XP_006826575
UniProt: W1NDN8
LinkDB
Position
Unknown
AA seq 450 aa
MESSREVVVVTSPLDSGISSFELGSGSEGLRLRSCTAHRHGLTCLGTHFLASSQIQNSNS
GAIFYWSWNKPQPVIKSFPVEPIKPLASNADGTYIVGGGSSGTIYLWEVASGKMIRKWSA
HFRAVTCLVFACDESLLISGAEDGMVMVWSLLKILDDAGSSVHREHSFSGHSLPITDIVC
GFGGCNSTIVSSSEDYTCKVWSLLTGLLRTVKFPSVINSVQLDAGEYALYAGSRDGKIYV
ADLNSGHSSHSIYGADIVCALSDHSKAVTSLAFSMDGFSLVSGSEDGTVRVWDVVSSQCI
RIFKHGKGPINNVLIVQLRTSLSDPSLARMSNSILGKNRFSLPSPLEKYLSKRDENPDGS
INVGPVVALRSNPFHSLDGQSFNSLTVLLNQIKELQQQGSSATSQMELERLKSDLGRAMQ
MVQRWQDVYQDLYSFSTAELLSNVDMTGVE
NT seq 1353 nt   +upstreamnt  +downstreamnt
atggagtcctctcgagaagtggtggtggtgacgtcgcctttggattcagggattagtagc
tttgaactgggttctggctcagagggtctccgccttcgctcctgcactgctcatcgtcat
ggcctcacttgccttggtactcacttcctggcctcttctcaaatccaaaattccaactct
ggtgccattttctactggtcttggaacaagcctcaaccagtaattaaaagcttccctgtt
gaaccaatcaaacctcttgcttcgaatgctgatggcacatatattgttgggggaggttcg
tcaggaactatttacttgtgggaggtggcaagtggcaaaatgattaggaagtggtctgcc
cattttagagcagtcacttgcttggtcttcgcttgcgatgaatctctgttaatctctggg
gctgaggatggaatggtcatggtttggtctttgcttaagatattagatgatgcaggatca
tcagtgcatcgtgaacacagtttttctggtcacagtttaccgataactgacattgtatgt
ggctttggagggtgtaattcaactattgtatcttcttcagaggattatacttgtaaggta
tggagcttattaacaggtctcttgagaactgttaaatttccatctgtaattaattccgtt
cagctggatgctggcgaatatgcgctttatgctggcagcagagatggcaaaatatatgtt
gctgatctcaattcaggacattcctcccacagcatctatggtgcagatattgtttgtgca
ttatctgatcatagtaaagctgtgacaagtttggcctttagtatggatggattttcatta
gtttctggatcagaggatggcactgttcgggtgtgggatgtagtaagcagccagtgtatt
cgcatatttaaacatggaaaaggacctatcaacaatgttctcattgtacaactacgaacc
tcattaagtgatccttcattggctcggatgtctaattcgatattgggaaagaatcgattt
tctttaccatctccactggagaagtatcttagtaagagggatgagaatcctgatggaagc
atcaatgttggacctgtagttgcgcttcgctctaaccctttccattcattggatggccaa
tccttcaacagtcttaccgtgttgttgaatcaaatcaaagaactccagcaacagggttct
tcagcaacttcacaaatggagttggaaaggctaaaatcggatcttgggagagccatgcaa
atggttcagagatggcaagatgtctatcaagatttatatagcttctccacagcagagctt
ctgagtaatgttgacatgacgggtgttgaatga

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