Amborella trichopoda: 18422015
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Entry
18422015 CDS
T02990
Name
(RefSeq) polypyrimidine tract-binding protein homolog 1 isoform X1
KO
K14948
polypyrimidine tract-binding protein 2
Organism
atr
Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atr03041
]
18422015
Spliceosome [BR:
atr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
18422015
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_8
Motif
Other DBs
NCBI-GeneID:
18422015
NCBI-ProteinID:
XP_011622366
LinkDB
All DBs
Position
Unknown
AA seq
477 aa
AA seq
DB search
MSSSSGQPQFRYTQTPSKVLHLRNLPWECTEEELIELCKPFGKIVNTKCNVGANRNQAFV
EFVDLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRQEIVNNKSSGDVAGNVLLVTIEGV
EAGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFSDSETASAARNALDGRSIPRYL
LPEHVGSCHLRISFSAHTDLNIKFQSHRSRDYTNPYLPVNPSAIEGTAQPVVGPDGKRKE
PESNVLLASIENMQYVVTVDVLHTVFSAFGTVQKIAIFEKNGGLQALIQYPDITTAAVAK
EHLEGHCIYEGGYCKLHLSYSRHTDLNVKAHNDRSKDYTIPDSNLLGVPQAPGIPPSAPG
WQSPLGNDYSGGSQAMVPDGQVGMWNPSLQAPRANFNPASNAFPGQAFMPPPPPPTYPAN
SGALLGSPSDLSQENYAKNGNTFQQQSDQLPNGPSLQSAQLPPYGRGAHPPQAPYYR
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttcgtcagggcaacctcagtttcgatacactcaaactccttcaaaagttttg
catctccgcaaccttccatgggaatgcacagaagaagagctcattgagctctgcaagcca
tttgggaagattgtcaacaccaaatgcaatgttggggccaaccgtaaccaggctttcgtc
gaatttgtggaccttaatcaggccatttccatggtttcatattatgcttcttcatcagag
ccagcacaggtgcggggaaaaacagtatatatccaatattctaacaggcaagaaattgtc
aacaacaagagctccggagatgttgctgggaatgttttgctagtgaccattgaaggtgta
gaagctggtgatgtcagtatagatgtcattcacctcgtattttctgcctttggatttgtg
cacaagattgcaacttttgaaaaggctgctggatttcaggcattgatacagttcagcgat
tctgaaactgcctctgctgcaagaaatgcattggatgggagaagtattccaaggtaccta
cttccagagcatgttggttcttgccatttacggatatcattttcagctcatactgacttg
aatatcaaatttcaatcacatcgcagcagggattacacaaatccttaccttcctgtgaat
ccttcggctattgaaggcactgcacagcctgttgtaggcccagacgggaagagaaaggaa
ccagagagcaatgtacttcttgcttccattgagaacatgcaatatgtagtgactgttgat
gttcttcacacggtgttctcagcatttggcactgttcaaaaaattgctatctttgagaag
aatggtggtctgcaggcattgattcagtaccctgatataacaacagctgcagttgccaaa
gaacatttggagggacactgcatctatgaaggtggctattgtaagcttcatctgtcatac
tctcgtcatactgatctcaatgttaaggctcacaatgatagaagcaaagactacacgatt
cctgattcaaacctattaggagtgccacaagctccaggtattccaccctccgcaccaggt
tggcaaagtccacttggaaatgattacagcggtggctcacaagcaatggtaccagatggt
caagtgggtatgtggaatccaagcttacaagccccaagagcgaattttaacccagctagc
aatgcatttccaggtcaagctttcatgccgccgccgccacctcctacttatcctgctaat
tcaggagctcttttaggtagtccatcagatttgtcacaggaaaactatgccaagaatggg
aatacttttcagcaacagtctgaccaattgccaaatgggccttctttacaaagtgcacag
ctcccgccttatggtcgaggagcacacccaccccaggccccctattatcgttag
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