Amborella trichopoda: 18422129
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Entry
18422129 CDS
T02990
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
atr
Amborella trichopoda
Pathway
atr03013
Nucleocytoplasmic transport
atr03015
mRNA surveillance pathway
atr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18422129
09122 Translation
03013 Nucleocytoplasmic transport
18422129
03015 mRNA surveillance pathway
18422129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18422129
03041 Spliceosome [BR:
atr03041
]
18422129
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
18422129
Spliceosome [BR:
atr03041
]
Complex C
Other components
EJC/TREX
18422129
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSB_motif
SAP
Ig_4
Motif
Other DBs
NCBI-GeneID:
18422129
NCBI-ProteinID:
XP_006827011
UniProt:
W1NFM1
LinkDB
All DBs
Position
Unknown
AA seq
743 aa
AA seq
DB search
MPSKYPVLGNRPLEQWKVTELKDELRKRNMITKGLKEDLLKRLSEAILNDENCVQENVGD
GLDTEVIPQVQQNDELTDLGNAPVYRPGENEAKKNTTESIIDDTETKDKDATMVDNDNSN
AIPNQGVEAQDCELTDSMKIETSEFMVTFPTGSPEVSISVSHSPVKQIESVEKQSSHESL
KEDEASKSPDKSEEPNLVNLIGSMDKQCKHEPVIEDEASRCPIKSEEPNLCNPNSQVSVK
GPYKSEEPNLVNQIESIDKQCKHEPVIEDEAFWSPIKSEEPNPFNPNSQVSGKVSPISGV
LLKCDSVSSDSVSINENEKNELKDNLNADNLHLELEASNPEGAYQSSTEVPPVGGSLDGQ
EPGVYQSSMEIDEALAASTHADLIKKVDSADGGSSEKLNLDRSSGDESLEDDGLESKQSD
VIQNTVEVRDKDEVSKLCPIKEDIAAVAAVADSSPNEKNVIVDRSNDSVNIGEKRKIEGD
QEAPRVKDPSKRQCRWNSEPLRVSESQNSLRSAPPLSNSFSVPRDRFSSLPKTTLTNPDS
PNNGGAPKERIVPPSEKPATTSLRIDQFLRPFTLKAVQELLAKTGTVSKFWMDHIKTHCY
VTYSSEDEAMATRNALYNLQWPSNGGRCLTAEFVDPEEVKVKLEAPLSSPATTTPNSNKQ
NSRQQPPNNATPLPSQPSLSKQPPLARETLAPPPPPSKKPAPPILTLDDLFMKTRASPRI
YFLPLSEEQVAAKLAARERRRRV
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgccatctaagtacccagttcttggcaatcggccacttgaacaatggaaagtgacagaa
ttgaaagatgaacttcggaaacgtaatatgataactaagggcttaaaggaggatttactg
aagcggttgtcggaagcaattctaaatgatgagaactgtgttcaagaaaatgtgggcgat
ggcttggatactgaagttattcctcaggttcagcaaaatgatgagctgacagatttggga
aatgcaccagtatatcgaccaggtgaaaatgaagctaaaaagaacactactgagtccatc
atagatgatactgaaactaaggataaggatgccacaatggttgacaatgataacagcaat
gccattcccaatcaaggggttgaagctcaagattgtgaattgactgattctatgaaaatt
gagacctctgaatttatggttacatttccaacgggttctccagaagtcagcatttcggtg
agtcatagccctgttaaacagatagaatccgttgagaaacagtctagtcatgaaagtctg
aaagaagacgaagcatcaaagagtcccgacaaaagcgaggagcccaaccttgtaaacctg
atagggtccatggacaaacagtgtaagcatgaacctgtgatagaagatgaggcatccagg
tgtcctatcaaaagcgaggagcccaacctttgcaacccaaattctcaggtatctgtgaag
ggtccctacaaaagcgaggagcccaaccttgtaaaccagatagagtccattgacaaacag
tgtaagcatgaacctgtgatagaagatgaggcattctggagtcctatcaaaagcgaggag
cccaaccctttcaacccaaattctcaggtatctggaaaggtcagccctatttcaggggtt
ctgctaaagtgtgattctgtttctagcgattctgtgtcaattaatgaaaatgaaaagaat
gaactaaaggataatttgaatgctgataatttacatttagaattagaagctagtaatcca
gagggggcctaccaatcatccactgaagtacctccagttggtggttctttggatggtcaa
gagccaggtgtgtatcagagctctatggagattgatgaggcccttgctgctagtacccat
gcagaccttatcaagaaagttgatagtgcagatggtggttcttctgaaaaactgaattta
gatagaagttcgggggatgaatcactggaggatgatggattagagagtaaacaaagtgat
gttattcaaaatactgttgaagtcagagacaaggatgaagtatcaaaattgtgtccaata
aaagaggacattgctgctgttgctgctgtggctgattcctctccaaatgagaagaatgtt
attgtagacagaagcaatgactcagtgaatattggggagaaaagaaaaattgaaggtgat
caggaggcacccagggtcaaggacccttcaaagaggcaatgtcggtggaactcggagcca
cttagggtatccgaatctcaaaattctcttcgttctgctcctccccttagtaattctttt
tctgtgcctagagatagattttcatccttgcctaagaccacgctcactaatcccgactct
cccaataatggaggtgcccccaaagagcgcattgttcctccatcggaaaagcctgcaact
acttctttgaggattgaccaattcctgcgtccattcactctaaaagctgttcaagagctt
ctggcaaaaactgggactgtctccaaattctggatggaccacatcaagacccactgttat
gtcacttattcatcagaggatgaagcaatggcaactcgaaatgctctctacaatctacag
tggccttctaatggtggccgctgccttacagctgagtttgttgatcctgaagaggttaag
gtcaaacttgaagctcccttatcttcacctgctactacaacaccaaattctaacaaacag
aactcacgtcaacaacctccaaacaatgccactcccttgccttctcagccttctctctct
aaacaaccacccctagccagagagacactggctccacctcctcccccttctaagaaacca
gcaccacctattctcacactcgacgatctcttcatgaaaacaagagcgagcccgcgcatc
tatttcctccccttgtcagaagaacaggttgctgctaaactagctgcacgggaaaggcgc
cggagggtgtag
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