Amborella trichopoda: 18422339
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Entry
18422339 CDS
T02990
Name
(RefSeq) transcription initiation factor TFIID subunit 2 isoform X1
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
atr
Amborella trichopoda
Pathway
atr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
18422339
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
atr01002
]
18422339
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atr03021
]
18422339
03036 Chromosome and associated proteins [BR:
atr03036
]
18422339
Peptidases and inhibitors [BR:
atr01002
]
Metallo peptidases
Family M1
18422339
Transcription machinery [BR:
atr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
18422339
Coactivators
SAGA/TFTC/STAGA complex
18422339
Chromosome and associated proteins [BR:
atr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
18422339
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Peptidase_M1
HEAT_2
Peptidase_M1_N
PhoD_N
Motif
Other DBs
NCBI-GeneID:
18422339
NCBI-ProteinID:
XP_020519393
LinkDB
All DBs
Position
Unknown
AA seq
1429 aa
AA seq
DB search
MAKPRKQKNGEQKPENSGAVVRHQKLCVSIDMDKQCLYGYTELKIIVPESGVVGLHADNM
NIDKIYVDGEPADYEFFPHYQHVEDERRWHSINCPSSASDAACYTYISSLDKEMASNLLI
LCNKSIKSSCEGHTNGNMGNSVQNPSAEFPQVLPTCNGHTVNENVKLVRIEYWVDKAETG
IHFKDNVLHTDNQIRRAHCWFPCIDNNLQRCCYDLEFTVDSKLVAVSNGILLYQVLSKDD
PPRKTYVYKLNVPVAAECISLAVAPFEIFPDRHNGAISHMCLPAYLSKLRNTVGFFYSAF
SHYEDYLSASFPFGSYKQVFITAEMAISSLNLGASMSMFSSQVLFDEKVIDQTFGTRIKL
AYALARQWFGMFITAERPNDGWLLEGLAGFLTDTFIKRSLGNNEARYRRYKTNCAVCKAD
IDGATALSSSAASSDLYGTQSIGLLGKVRAWKAVAVLQMLEKQMGPESFRKILQIIIYRA
QDKTRSLRALSTKEFRHFANKVGNLERPFLKEFFPRWVESCGCPVLRMGFSYNKRRNMIE
LAALRRCSTTVTPLASVGKDNPDSNNRECDVGWPGMMSIRVHELDGVYDHPSLPMAGEAC
QLLEIQCHSKLAAKRAPRPKKGSKPDGSDDNGDAVASLDARSGMESPLLWLRVDPEMEYL
AEIIFLQPVQMWINQLEKDKDVVAQVQAIAALEASSNQSFAIVHALNNFLCDSKVFWRVR
IEAAYALAKTACEETDWAGFFHLVKFYKSRRFDPDIGLPRPNDFHDFPEYFVLEAIPHAV
AMVRAADKKSPREAVEFILQLLKYNDNSGNQYSDVYWMAALVQSIGDLEFGHQTIQYLPS
LLKRIDRLMQFDRLMPSYNGILTISCIRTLTQIALTLSDYVSLDRVIELIKPFRNVGTTI
WQVRSEASRALLDLEFHSKGLNEALILCMRFIEEESSIRGQVKLTVHLLYLCQIKCGYSY
PYTLESSTLVAMLRLLGSRRSFNNVFLRHHLFCALQTLAGRCPTLYGVPKDQIQPIMEME
PSVDTKTKPSLLKLKISRPQDPLPNVPTLSSDVLPLPEVTIIEPDAISNGNERKAPVVKI
RVKQGAAPAGSSRLEDENAMETSRGGQPNEAERAGSSSVSVDAPLRVVNELVSVPCQNLE
EVNSSHEPGSRMSASIGGLKFTTNEEELGKELQCTADSRKGASHSPICKSIEEVTHEVSS
QVHDSNGAKAIAEISHVVSAQLYDLNRVSAVVECHESRAVEQGSEKKGEDERHESKVVER
VSEEKEDEGVKSRAAEEDSEKKDEGHDSSEVRQGSVEKKDQSHESREGPEGSVENKDEKK
EKKEHKRKREKEKKRDDPEYLERKRLKREKKKRKKEKMGLVDHVTKASMAEVNPLYSKVE
PMKNSEPTNLEPKLSLETKPNVESKGEVSGGPVHKLRIKFKGRSIGHVQ
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagccccggaagcagaagaatggggagcaaaaacctgagaattcaggagctgtt
gttcgtcatcagaagctatgtgtttccatagacatggacaagcaatgtttatacgggtat
actgaattgaaaattattgtcccagagagtggtgttgtaggattacatgcagataacatg
aacattgataaaatatatgtagatggagaaccagctgattatgaattctttcctcattat
caacatgttgaagatgaacggagatggcattctataaattgcccctcttctgctagtgat
gctgcatgctacacctacatatcatctttggacaaagaaatggcttccaatctactaatc
ctgtgtaataagtcaataaaatcatcttgtgaaggacacacaaatgggaatatggggaat
tccgttcaaaatccatcagctgaattcccccaagttcttcccacctgtaatggtcacaca
gtaaatgagaatgtgaaattggtccgtattgaatattgggttgacaaagccgaaacaggc
attcattttaaggacaatgtacttcatactgacaaccaaatcaggcgagcccattgctgg
tttccttgcatagacaataatttgcaacgttgttgctatgatctggagtttactgtagat
tccaagctggttgctgtcagtaatggaattctactttaccaggtcttgagcaaagatgat
cctcctcgcaaaacatatgtttataaattaaatgttccagttgccgcagagtgcatatct
ttagcagttgcaccatttgaaatttttccagatcgccataatggtgccatatctcacatg
tgtttgccagcatatctttcaaagcttcgaaacacagttgggtttttctatagtgcgttc
agccattatgaggattacctttctgcatcctttccatttggttcctacaagcaagttttt
atcactgctgagatggcaatatcttcattgaacttgggggcatcgatgtctatgtttagt
tctcaagttctatttgatgagaaggttattgatcagacttttggtactaggattaagctt
gcatatgcccttgcaagacaatggtttggaatgttcattactgccgagagaccaaatgat
ggatggcttttagagggccttgcaggttttcttacagataccttcatcaagcgttccctg
gggaataatgaggcacggtaccgtcgatataagacaaactgtgctgtttgcaaggcagat
attgatggggcaactgctttaagttcctctgcagcttccagtgatttgtatgggacacag
tccattggtttactgggcaaagttcgagcctggaaagctgttgcggtgcttcaaatgctt
gagaagcagatgggccctgaatccttccgcaagattctgcaaataattatctatcgagca
caagataaaactcggtccttgagagctcttagtacgaaggagttcaggcattttgcaaac
aaagttggcaatctagagcgcccctttctgaaagaattcttccctcgctgggtggaatct
tgtggttgtcctgttctgaggatgggattctcttataataagcggaggaatatgattgaa
ttagctgctcttcgtcgttgttctactacagtaacacctcttgcatcagttggtaaagac
aatcctgattcaaataatcgtgaatgtgatgttgggtggcctggaatgatgagcatcaga
gttcatgaacttgatggagtgtatgaccatccaagtttacctatggctggtgaagcttgt
caacttttagaaatacaatgccattcaaaacttgctgccaagcgcgctccacggcctaag
aaaggctcaaaacctgatggttctgatgacaatggtgatgctgttgcttcccttgatgcc
cgttctggaatggagtcccccttgctttggctgagggtggacccagaaatggagtacctg
gcggaaatcatatttcttcaacctgttcagatgtggatcaatcaattagagaaggacaag
gatgttgttgctcaagttcaagccatagcggcattagaggcatcttctaatcagtcattt
gccattgttcatgctttaaataattttctttgtgattcaaaggtattctggagagtccga
attgaagctgcttatgctttggcaaagacagcttgtgaggaaactgattgggctggcttc
tttcatttggttaagttttataaaagccgaagatttgatccggacattggactaccaagg
ccaaatgactttcatgattttcctgaatactttgtacttgaggctatcccacatgcagtt
gccatggttagagcagcagataagaaaagcccaagagaagctgttgaattcatcttgcag
ttgttaaagtataatgacaatagtgggaaccagtattctgacgtgtactggatggcggcg
ttggtgcaatcgattggtgaccttgaatttgggcatcagaccattcaatatttaccatct
cttctcaagcgcatagatcgattaatgcagtttgaccggctgatgcccagctacaatggc
atcctgacaatcagctgcatccgcacactgacacagattgcattgactctgtcggactat
gtatctttagatcgtgtaattgagcttattaaaccttttcgaaatgttgggacaacaata
tggcaagttcgaagtgaggcaagcagggcactcctcgatcttgagttccatagtaaaggc
cttaatgaggccctaatattgtgcatgagatttatagaggaagaatcttcaatacgagga
caagtgaaattgacagttcatctcctctacctttgtcaaattaagtgtggctattcatat
ccatacactcttgagagttctacacttgttgccatgcttcgtttacttggaagtcggaga
tctttcaacaatgttttccttcggcaccacctgttctgtgctttgcaaactttggcagga
aggtgtccaactctttatggggtgccaaaagatcaaatacaacccattatggagatggag
ccatcggttgacacgaaaactaaaccaagtctcctcaagctgaagatctctcgaccccaa
gatcccctccccaatgtgcccaccctctcctctgatgtcttgcccctacccgaagtcacc
attatagaaccagatgccatttccaatggtaatgaacgcaaggcacctgttgtaaaaatc
agagtaaaacagggtgcagccccagcaggtagcagcagattagaggatgagaatgcaatg
gaaacctcacggggtgggcaaccaaatgaggcagagagagcaggaagcagctctgtatcg
gtagatgctcctcttagggtcgtgaatgagctggtgagtgtcccttgccaaaaccttgag
gaggtgaactcctctcatgagcctggttctcgcatgagtgcgagcattgggggcttgaaa
ttcactactaatgaggaggaattaggcaaggaattgcaatgcactgctgattctagaaaa
ggggcatcccattctcccatctgcaagtccattgaggaagtaactcatgaagtctcttcc
caggtgcatgactctaatggggccaaagcaattgctgaaatcagtcatgttgtctctgct
cagctgtatgacttgaacagggtgtctgctgtggtagaatgccatgaatctagggcagtg
gagcaagggtctgagaagaaaggtgaggatgagcgccacgaatctaaggtagtggagcga
gtttctgaggagaaggaagacgagggcgtcaaatccagggcagcggaggaagattctgag
aagaaagatgagggccatgactctagtgaagtgcggcaaggttcagtggagaagaaagat
cagagccatgaatctagagaaggcccagagggctctgtggagaacaaagatgagaaaaag
gagaagaaagaacataaaaggaagagagagaaagagaagaagcgtgatgatcccgagtat
ttggagaggaagcggctcaagagggagaagaagaagaggaagaaagagaagatgggcttg
gtagatcacgtaaccaaggcttccatggctgaagtgaacccactatattcaaaggttgag
ccaatgaagaattcggaaccgacaaatttggaaccaaagctgagtttggaaaccaagcca
aatgtcgagagcaaaggggaggtttcaggagggcctgtacataagctcaggattaagttc
aagggtcgaagcatcggccatgtacagtga
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integrated database retrieval system
