Amborella trichopoda: 18422368
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Entry
18422368 CDS
T02990
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
atr
Amborella trichopoda
Pathway
atr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18422368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18422368
03041 Spliceosome [BR:
atr03041
]
18422368
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
18422368
Spliceosome [BR:
atr03041
]
Complex B
Other components
Prp19-related factors
18422368
Complex C
18422368
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_2
TPR_8
TPR_15
TPR_12
TPR_16
TPR_19
ARM_TT21
PPR
Motif
Other DBs
NCBI-GeneID:
18422368
NCBI-ProteinID:
XP_006827102
UniProt:
W1NGL3
LinkDB
All DBs
Position
Unknown
AA seq
929 aa
AA seq
DB search
MDLLYPSKDDLPYEEEILRNPLSLKHWWRYLIALKDAPFKKRAVIYERALKALPGSYKLW
HAYLRERLELVRGLPVVHSQYETLNNTFERALVTMHKMPRIWILYLQILTDQKFLTRTRR
TFDRALCALPVTQHDRIWEPYLVFVSQKGVPVETSLRVYRRYLKFDPTHIEDFIEFLQNS
ELWQEAAERLAEVLNDDKFYSIKGKSRHKLWLELCDLLTRHAEEVSGLKVDAIIRGGIRK
YTDEVGRLWTSLADYYIRRGLYEKARDIYEEGMTTVVTVRDFGMIFDSYTQFEESMVAAR
MESLNLDDDENEGGNDRKKDENEGSEKSGVGSKQEDDNGQDPRLLVDGLSRKNFDGFWLN
DENDIDLRLARLENLMDRRPELVSSVLLRQNPHNVPEWHNRAKLFKDNPTRQILTFTEAV
RTVDPMKAVGKPHTLWVSFARLYEKHNDLANARVIFEKAVQVSYKALDDLASVWCEWAEM
ELRHKNFRGALELMRRATAKPSVEIKRRVAADGNEPVQMKLHKSLKLWAFYVDLEESLGN
LESTRAVYERILDLKIATPQIIMNYALLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVT
YLSKFVKRYGKAKLERARELFEQAVEQAPVEHVKPIYLQYAKLEEDHGLAKRAMKVYDQA
AKAVPDNEKMNIYEIYIARAVEIFGVPRTREIYEQAIESGLPDKDVKTMCMKYADLEKNL
GEIDRARGIYIFASQFADPRSDVAFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTH
FILPEYLMQKDQKLVLEETVDTLKRAGVPEDEMAVLERQLAPPASGTTTKDGMRAVGFVS
AGVESQPGVTQTADGGRKVTANPEDIELQDESDTEEDNDKVEVAQKDVPAAVFGELAKKM
EKGRDSESKDSEGNGPLGALERIKRQRRQ
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggatctactctaccctagcaaggatgatttaccctatgaagaagagatccttagaaat
cctctgagcctgaagcattggtggcgctatctcattgctctgaaagatgccccattcaag
aaacgagctgtgatttacgaaagggcactgaaagcgctacctggaagttacaaactatgg
catgcttaccttagagagaggttggaactggtaaggggcctccctgttgttcattcgcaa
tacgaaaccctgaacaacacgttcgagagagctctggtcactatgcacaagatgcctagg
atatggattttgtatcttcagatcctcactgatcagaagttcttaacaaggactcgaaga
accttcgatcgagctctttgtgcattgcctgttacccagcatgatagaatttgggagccc
tatttggttttcgtgagccaaaagggggtccctgtagagacctctcttagggtttatagg
cgatacttgaaatttgacccgacccacattgaggatttcatcgaattccttcagaattct
gagctttggcaagaagcagccgagagattagccgaggtgctgaacgacgataaattctat
tctatcaaagggaaatcaaggcataagctatggctcgagctatgtgacctgctcaccagg
catgctgaagaggtttcaggtcttaaggttgatgccattataagaggggggatcaggaaa
tacactgatgaagttgggcggctttggacttcgcttgctgattattacataaggagggga
ttgtatgagaaggcaagagacatttatgaagaggggatgaccactgtcgtgactgtgagg
gattttgggatgatcttcgattcttatacccaatttgaagagagcatggtggctgccaga
atggaaagcttgaacttggatgatgatgaaaatgaggggggtaatgatcggaaaaaagat
gaaaatgaaggtagtgaaaaaagtggggtaggctcaaaacaagaagatgacaatggccaa
gaccctagattattggttgatgggcttagtaggaagaactttgatggcttctggcttaat
gatgaaaatgatatcgacctccgattggcgaggctagagaacctcatggatagaaggcct
gagcttgttagcagtgttttactgcgacaaaatcctcataatgtgcctgaatggcataac
agagcaaagctcttcaaagacaaccccactagacaaatacttacattcaccgaggcagtg
aggacagtggatcctatgaaagcagtggggaaacctcacactttgtgggtttcctttgct
cgtctttatgagaaacacaatgaccttgcgaatgcacgggtgatatttgagaaggctgtt
caggtcagctacaaagctctggatgatttggctagtgtttggtgtgagtgggcagagatg
gagttgaggcacaagaattttagaggggcattggagctcatgagacgggcaacagcaaag
ccatcagttgagatcaaacgtagagttgctgctgatggaaatgagccagtgcagatgaag
cttcacaaatcattgaagctctgggccttttatgttgatttggaagagagcctcggaaat
ttggaatcaactagagccgtgtacgagcgtatacttgatctgaaaatagctactccccaa
attataatgaactatgcattgcttctagaggagaataaatactttgaagatgcatttaag
gtttatgaaagaggagttaagatttttaaatatccacatgtcaaggatatctgggtcaca
tatctttcgaagttcgtgaaaagatatgggaaggcaaaattagaacgtgcaagagagtta
tttgagcaagcagttgagcaggcacctgtagagcacgtgaagcccatatatctacaatat
gcaaaactggaagaggaccatgggcttgcaaagcgtgcaatgaaagtttatgatcaagct
gctaaggctgtcccagacaacgaaaaaatgaacatatatgagatttacatagcacgtgct
gttgaaatttttggtgttccaagaacgagagagatatatgagcaagctattgagagtggt
cttccagacaaagatgtgaaaaccatgtgcatgaagtatgctgatctcgagaaaaatttg
ggagagatcgatcgtgctcgaggcatttacatattcgcatcacaatttgctgatcctcgc
tctgatgtcgccttctggaataaatggcatgagtttgaggtgcaacatggcaatgaagac
accttcagagaaatgcttcgtatcaaacgcagtgtctcagcaagctacagccagacgcat
tttatcctccccgagtatttgatgcaaaaggatcagaagctcgttctcgaggaaacagta
gacacactaaagcgagcaggtgttcctgaggatgaaatggctgtcttagagagacaatta
gccccaccagccagtggaacgactacaaaggatggaatgagagcagtgggttttgttagt
gctggagtggaatcacaaccaggggttacccaaactgctgatggtggaagaaaggtaact
gcgaatcctgaggatatcgagttacaagatgagagcgatacagaggaagacaatgacaaa
gttgaagtggcccaaaaagatgtccctgctgctgtttttggtgagcttgcgaaaaagatg
gaaaaagggagagattctgaatccaaagatagtgagggtaatgggcctttgggtgctctt
gagagaataaagagacaaagaagacaatag
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