Amborella trichopoda: 18422490
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Entry
18422490 CDS
T02990
Name
(RefSeq) zinc finger CCCH domain-containing protein 27 isoform X1
KO
K13192
RNA-binding protein 26
Organism
atr
Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
atr01009
]
18422490
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18422490
03041 Spliceosome [BR:
atr03041
]
18422490
Protein phosphatases and associated proteins [BR:
atr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
18422490
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
18422490
Spliceosome [BR:
atr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
18422490
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
PWI
RRM_Nup35
zf_CCCH_4
RL
zf-CCCH
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
18422490
NCBI-ProteinID:
XP_011623446
LinkDB
All DBs
Position
Unknown
AA seq
1070 aa
AA seq
DB search
MKFEETSLTSYLVKNLEPLTEADPVILAKYVTALLKKDKPIKELQKLCNENLVEFLGQDT
MPFISKLFQALEDGTILMPAESVNTISQVELSPAVISADPGELRSSSPKPDRVSSSAAHD
SDSEEKEISDDEDDDRNHKHRRRETRSQSFEREAHEPFLRRLNKNRGKPFENGPPLLESE
PLSGATRKEFTNSERDLSGKRRLGPIPFPRPPLDVCQRARGSQTYFDLSTSLGHSPIGRG
RGRGIGSWAPHESRFNPVDALDFASPLVPQVPKPTSLFAGRGLSNAANTTSPSWGAFGLM
HGMPAGGLDALHNMHSGLQGAIQPPLNSSLSIGIARPRCRDFEERGFCLRGDMCPMEHGV
NRIVVEDVQKSFKCQSLSQFNLPVSISSARFVGMSATASTLPTVTASSTVAMNGKGFLNK
SSKYSPSDEGLRLNGVLSSSAHNEADLYDPDQPLWNNDHPETSSGLLKLSSPKVHHTEPP
WDSEFSDRPTSRLSDDIDIEKSGRSMAVGAHNSVSSVWGRISHKPDGLSKSDTTSNDRAY
HATEANGEPEVHMMDVQRPFHHVKRNFGTVAEDSEHKSTNLMGSSVRRSINGRPLPSHGK
GSEKAQRTLFVNCIPQNSNKKEALLSHFKKFGEVIDIYIPPNGERAFIQFSKREDAETAL
KAPDAVMGNRFIKLWWANWDIVPVEGGSSFAAAPPNIVAASVPSQRLFSEKGKEKITSVV
TKISSAPPSDTSSTSAVPLKNFVVKDSKPLPPSQKKLETLEHLKEELRIKQEMLAQKRSD
FRKQLDKLEKQGLAVKGETATDHVGKRQKTETVSAVSCTSNPTQVSNHSPGTESVVAKGN
SGDSVSAKSLKEHMGPQASPKGSKQPSRLAPSVSSPFLINRYKLDNRPTAFKILPPLPTG
LANATVLKEHFAAFGDLSFVDLDEQDDQIDNDASKLAKDCSVHITFTTRHSAERAFLGGK
CWQGQNLQFAWIIPSNSASANAKHLSGDCSSSASKAPADTLIAAGSSVPRQESVAAGNGL
ADDGQCNRSGKGEAERQFSSPKLCKKKQLGKDEIMNFSVSGDVGDSIPHS
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaagagacatccttgactagttaccttgtgaagaatctcgaacctctgacg
gaagctgacccagtgattcttgccaagtatgtcacggcattattaaaaaaagacaaacct
ataaaggaactacaaaaactttgcaatgagaacctggttgaatttctgggccaagataca
atgccctttatttccaaattgtttcaagctctagaggatggtaccatcttaatgccagct
gagagtgtgaatactatcagccaagtggaattatcccctgctgttattagtgcagatcct
ggtgaactgagaagctcatcaccaaagcctgatcgagtctccagttctgctgcccatgat
agtgattctgaagagaaagagatcagtgatgatgaagatgacgatcgcaaccataagcat
cggaggagggagacacgatcccagtcctttgagagagaagctcatgaacctttcctaagg
agactgaacaagaatcggggcaagccatttgaaaatggaccacccttgctggagtctgaa
cctctgtccggtgcaactcgaaaggaatttacaaattcagagagggacctctctggaaaa
cgacgtcttgggcccatcccatttcctcggcctcctttggatgtatgtcagagggcaaga
ggtagccaaacatactttgatttgtcaacttcgttgggtcactcaccaattggcagagga
agaggaaggggtatagggtcctgggctccacatgaatctagattcaatcctgtggatgct
cttgattttgcatcaccattagttcctcaagtaccaaaacccacatctctatttgctgga
aggggactatctaatgctgccaacacaacaagcccgtcttggggtgcgttcggcttgatg
catggaatgcctgcagggggtctagacgcactccataatatgcattcgggtttgcaagga
gcaatacaaccacccttgaattcttcattaagtattggcattgctaggcctcgttgtagg
gattttgaggaacgtggtttttgtctgcggggggacatgtgcccaatggagcatggtgta
aatcgtattgtcgttgaagatgttcagaaatcttttaaatgccagagcctttcgcagttc
aatcttcctgtttcaatttcaagtgcaagatttgtcgggatgagtgctacagcaagtact
ctacctacagtcactgcctcttctaccgtggcgatgaatggcaaaggctttcttaacaaa
agcagcaaatacagtccgagtgatgaagggttgagattaaatggggtcctgtcatcttca
gctcataatgaagctgacttatatgatcctgaccagccattgtggaataatgaccatccg
gaaacttcaagtgggcttctgaagctttcttcacctaaggtgcatcatactgagcctcca
tgggattccgaattctctgatcgtcctacttcgaggttatctgatgatattgacattgag
aagtcaggtagaagcatggcagttggggctcacaactcggtttcatctgtatggggtcgg
attagtcacaaaccagatgggttgagtaagagtgacaccacatcgaatgaccgagcttat
catgccaccgaagcaaatggggaaccagaggtccatatgatggatgtccaaaggcctttc
catcatgtcaagcggaattttggaactgttgctgaggatagtgaacacaaatccacaaat
ttgatgggtagctcggtgcgacgatctatcaatgggcgccctctcccatcacatgggaaa
gggtctgaaaaagctcagcgtactttgtttgtgaattgtataccccagaatagcaacaag
aaagaggctcttctttcccattttaagaaatttggtgaggtcattgacatctatatccca
cctaatggcgagagggcctttatccagttctcaaaaagggaagatgcggagactgccctt
aaggctcctgatgcggtgatgggtaaccgctttatcaagctatggtgggctaactgggat
attgttcctgtggaaggaggtagtagttttgctgctgcaccacctaatattgtggctgcc
agtgttccatctcagcgattgttttctgagaagggaaaggaaaagattacatctgtggtt
acaaagatcagtagtgcaccaccttctgatacatcctctaccagtgctgttcccctgaaa
aacttcgtggtgaaagactccaaacccttacctccatcacagaagaagctggagaccctg
gagcacttgaaggaagagctgagaataaagcaggaaatgttggcccaaaagcgtagtgac
tttcgtaaacagctggataaacttgaaaaacaagggctagctgttaagggagaaacagct
actgatcatgttggtaaaagacagaaaacagagactgtatctgcagtatcttgtacttct
aatcctacccaggtatctaaccatagtccaggtactgaatcagtagtggcaaagggcaat
tctggggatagtgtttccgcaaaaagcttgaaagaacatatggggccacaagcttctcca
aaaggttcaaaacagccatctcgcctggcaccttcagtcagttctccatttctcattaat
cggtataaattggacaaccgccctactgcattcaaaatacttcctcctctacccactggt
cttgccaatgctactgtgctcaaggagcactttgcagcatttggggacctctcttttgtt
gatctagatgagcaagatgatcaaattgacaatgatgcctcaaagttggcgaaagactgt
tctgtccatataacattcactacacggcattccgctgaaagagcattcctaggtggtaaa
tgctggcaggggcaaaatttacagttcgcatggatcataccttccaatagtgctagtgct
aatgctaagcatttgtctggagactgttctagttcagcatcaaaagcacctgctgatact
ttaattgcagctggaagttcagttccccgtcaggaatctgttgctgctggaaatggacta
gcagacgatgggcagtgtaatagaagtggtaaaggagaggccgaaaggcagtttagctct
ccaaagttgtgcaaaaagaaacagcttggaaaggatgaaattatgaatttcagtgttagt
ggtgacgttggtgattcaattcctcatagttga
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integrated database retrieval system
