KEGG   Amborella trichopoda: 18422837
Entry
18422837          CDS       T02990                                 
Name
(RefSeq) histone deacetylase 19
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
atr  Amborella trichopoda
Pathway
atr03082  ATP-dependent chromatin remodeling
atr03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:atr00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    18422837
   03083 Polycomb repressive complex
    18422837
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:atr03036]
    18422837
Enzymes [BR:atr01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     18422837
Chromosome and associated proteins [BR:atr03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     18422837
   HDAC complexes
    Sin3A-HDAC complex
     18422837
    BRAF-HDAC complex
     18422837
    REST complex
     18422837
    SHIP complex
     18422837
    MiDAC complex
     18422837
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     18422837
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    18422837
  Chromatin remodeling factors
   NuRD complex
    18422837
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 18422837
NCBI-ProteinID: XP_006827551
UniProt: W1NGP3
LinkDB
Position
Unknown
AA seq 506 aa
MDTGGSSLPSGPDGVKRKVSYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLHQMQ
VLKPFPSRDRDLCKFHADDYVAFLRGITPETQQDHMKALKRFNVGEDCPVFDGLYSFCQT
YAGGSVGGAVKLNHRLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLY
VDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYGKGKYYSLNVPLDDGI
DDDSYQFLFKPIMAKVMEVFQPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRFMRSFN
VPLLLLGGGGYTIRNVARCWCYETGVAIGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMEN
KNSRQLVENIKVKSLQNLSRLPHAPSVPFYERPPDTELPEEDDDYDRKEERLESDHLNLD
TEMGELKHSNEVIWYPDRKSIPSIQNIRPKKAIGEAELKDENQDDRKEVVENVRCMDIET
EENLGSKSSEPVLVETDQPRSNITEP
NT seq 1521 nt   +upstreamnt  +downstreamnt
atggacactggaggaagctctcttccttcaggccctgacggggtgaagcgaaaggtctcg
tatttctatgacccagaggtcgggaactattattatggtcaaggtcaccccatgaagccc
catcgaatccgtatgacccatgcccttttggctcattatggcctcctccaccaaatgcaa
gttctcaagcccttcccttctagggatagggatttatgcaagttccatgctgatgattat
gttgcttttttgaggggtataactcctgaaactcaacaagatcatatgaaggcattaaag
aggttcaacgtgggagaagattgcccggtttttgatggtctttactctttttgtcaaact
tatgctggtggatcagttgggggtgctgtgaaattgaaccataggctctgtgatattgcc
atcaattgggctgggggccttcaccatgccaaaaagtgtgaggcttcagggttttgttat
gtgaatgatattgtgttggcaattttggaactattgaagcagcatgagcgggttctgtat
gttgatattgacatccaccatggagatggtgttgaggaagccttttacacaactgacagg
gttatgacagtttcgttccataagtttggcgattatttccctgggacaggtgatattcgt
gatattgggtacggaaaagggaaatattactctttgaatgtgcctctggatgatggaatt
gatgatgacagctaccaattcttatttaagccgatcatggccaaagttatggaagttttt
caaccgggtgccgttgttttacagtgcggggctgactccctatcaggagatcgactaggt
tgcttcaacctatccatcaaaggccatgcagagtgtgtgaggttcatgagatcattcaat
gtgccattgctcctcctcggcggcggtgggtacaccattaggaatgtggctagatgctgg
tgttatgagacaggagttgccattggtgtggaagttgatgataagatgccccaacatgag
tattatgagtattttggacctgactatactctgcatgttgccccgagtaatatggaaaac
aaaaattcacggcaattagttgagaacattaaagtaaagtcgcttcagaatctctccagg
cttccacatgcccctagtgtcccattttatgagcggccccctgatactgagcttcctgag
gaagatgatgactacgacagaaaagaagagagattggaaagcgatcacttgaatttggat
actgaaatgggtgaattgaagcattcaaatgaggttatttggtaccctgacaggaagtct
atcccatccatccaaaatattcgaccaaagaaagcaattggagaggctgagctaaaagat
gagaatcaggatgatcggaaggaagtggtagagaatgttagatgcatggatattgaaaca
gaagaaaaccttggctcaaagtcttcagaacctgttctcgtggagactgaccagccaagg
agcaatatcactgagccatag

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