Amborella trichopoda: 18422903
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Entry
18422903 CDS
T02990
Name
(RefSeq) protein SHORTAGE IN CHIASMATA 1 isoform X2
KO
K28108
shortage in chiasmata 1
Organism
atr
Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
atr03036
]
18422903
Chromosome and associated proteins [BR:
atr03036
]
Eukaryotic type
Meiosis-specific proteins
Others
18422903
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
18422903
NCBI-ProteinID:
XP_011626111
LinkDB
All DBs
Position
Unknown
AA seq
1726 aa
AA seq
DB search
MRTRFLVLDFFNHSSDTSGFTSLPVPKLPPLKASVFLNHSETEGEFCFFDCVFSLSHGLQ
ALSFDKALSAFLSYVIPENLALQRDDSLEKRTSGGNQPKLKRIEFNQRVELQRARDFDLV
KTGGNGAQEKQSKANENTLLEEGKNGALYRVVHFETPEVDLPQDIFDFNHGDMGLHCHDF
PRSIIEPMPAKAFSEKEIHEVENANIDADMTHQFSGDLTHFEVCEIGHEAYDAQFGDETF
HSLVASEINSHFYENDIEFDFEELLRSRTNSMWKTLLELDSFEQCKEPHSTCLVQLLDME
YKCPDNDFFTNTMCSRIDMKILDGDSYSLVHYINFDKYQFLDWSYCQAFHLADLELVTET
NLLEVLLKEDLNSVKTFNECIVGPELALADETFHSLPIPALPDYKELCSLCELLDRILDD
LKPHSASACDWIYLDWHLSQEDKCNRNICLTLKSKTEKVDSINTSSKLDSTKEMVELDFL
FLVDDELPDASNTVWFSKATTHDFPGTLTSASVPLTRSNPSVLRETNSRNIPQALKTTIK
TNSENLSSLYESMSISNDLSFFIHARKGTTVGNVENLSQENVARTSLLGISSRNSTEASI
LTQSTSHKWNVKIHWINLCDPIMNIFHEIQKSCVAILENIALLQSKGTLSVVDYALHFSK
LKLMDLIKHSGKCLSTLECEDENFMNFIALYALKQMAYYLCYSGIYTTHLYVMNLVQSVK
FLKMRLSLLQSSIEDAHSKAEKGLMESHPSLPIMERIITLSSSRNGKKTLIVADRIFWLP
LKKKLATMGMLYYEWGIDRMHLSRQNTFEDKEEPTLSILEALLNFDCLIISPENVWSSFP
FNEFSIILEYGGLYDSSRVSVISTTFVGLPCIDFLKVNLDDLDVSGTLWDSSDALEHPEV
VKEGSNQTFRTSHEDFNCCQWVKLLNYIPPSEKGAHSTTSKASEVEEASSLIEAESHDPM
KLGTQFTSRPNLVIIVNTQNLDRELLISRRSSYQRILAMEKEGVQVVEREMPVPVDLVFS
ATMCLLWYTARKLGMNAPIRAESSSCMPLCIENIASELLMSLSFTFSDCILIFEGDSIFL
GAVMESSDGLYAAAASLNMNLQLFFSSSSDLTDDIIESTIRHSARLNKCLYPAMLESETL
AESFLTSFPSINPLLAHAVLSCGITLREFLEWTHEQRVMALRDYNVSEESVLLFSALCKY
GDLGESKSGTTDCSSLSSAMDTDSSYTNRQSHQRPEIQSIDILEVDHMHVMPSKKYKAGE
PSVSLLYQSNEGSNVNELHKKILEGRETKKQSYGLVEPQRDPRHGLGTTLFKEIDWGDLN
SAEDATKGSDVYRVHQTLSEGRGRKSQNYEVLKSHLGVKQGLGSTLLKEIDDRARTENAN
RGSHINEFHRKSVEGGERKEKRHEFVKPHLGPKQGLATTSSKEIEWIDLDRTDDAHEAIR
TEVIDLETDFFSDNIFSPMKTVEVFTRNNVVKESPSGNSNDISKLMFDPSNLHGFPTSAE
ITCDSDTWIPFTDSKNLFEEKNYKKPKIKAVVDGLINQHEVGILPDSKMEQTFLKVPFKL
PLQEEGSSSSYIKNSFLKASQLPRPQQGSPWTIEFLNRIKEKSKMHKTLPLCNTYMNSPG
GSRRIDKGFTRKSPSILEGYRYKGGNQAKKASKQKFQKRFQSPLDLSPREQKQGNVSSYL
APAWTPLDKRARQVLSFTRNGDETQSRLIWSDGAINNLRNKFQRGS
NT seq
5181 nt
NT seq
+upstream
nt +downstream
nt
atgcggactcgctttctagtccttgatttctttaaccacagctccgatacatctggtttc
acatctttaccagtccctaagcttcctcctttgaaggcttcagtttttttgaatcattct
gaaacggaaggggaattctgcttctttgactgtgtcttcagccttagccatgggctacaa
gctctatctttcgataaagccttatctgccttcctttcatatgttattcctgagaatttg
gctttgcaaagagacgattctctggaaaagcgtacgagtggaggaaatcaacccaaattg
aaaaggattgaattcaatcagagagtggagttgcaaagggcaagggatttcgatttggtt
aagactgggggaaatggggctcaagagaagcaaagcaaagctaatgaaaatactttattg
gaggagggaaagaacggtgcactttacagggttgttcattttgagacaccggaggttgat
ctccctcaggacatatttgacttcaatcatggagacatgggcttgcattgtcatgatttt
ccaagatcaataatcgaacccatgcctgccaaggctttttcagagaaagaaatccatgaa
gttgaaaatgcaaatatagatgctgacatgacacatcaattctcaggtgaccttactcat
tttgaggtttgtgagattggccatgaggcatacgatgcacaatttggagatgaaacgttc
cattctctggttgccagtgaaataaatagtcatttctatgaaaatgacatagagttcgat
tttgaagaacttctaaggtcaaggaccaatagcatgtggaagactttgttggaacttgat
tcctttgagcagtgcaaagaacctcattctacatgccttgtacagctattagatatggag
tataagtgtcctgacaatgacttcttcaccaatacgatgtgttcgagaattgatatgaag
atcttagatggtgattcttattctttggttcattatatcaattttgataagtatcaattc
ctggactggtcttattgtcaagcattccatctagctgatttagagttggtcactgaaact
aatttattggaggtactgctcaaagaagacttaaattcagttaagaccttcaatgaatgc
attgttggtccagaattagcattggcagatgagacatttcattcattgcctatacctgcc
ctgcctgactataaagagttgtgttcattatgtgaacttcttgatcgaattcttgatgat
ttaaagcctcactcggcatctgcctgtgattggatttacctggattggcatctttctcaa
gaagataaatgcaaccgtaatatttgtttaactctcaagagcaagacagagaaggtggat
tctatcaatacatcttctaaactggattccactaaagaaatggtggaactggacttccta
tttttggttgatgatgagcttccagatgcatcaaacacagtatggttcagtaaagcaacc
actcatgactttcctggcactctgacttcagcctcagtgcctctaactagaagcaatcca
tctgttctgcgtgaaacaaatagcagaaacatacctcaagctctaaaaaccacaattaag
acgaactctgagaatctctcttcactctatgagtctatgtccatatccaatgatctgagt
ttcttcatacatgctcgaaaaggcacgaccgtgggaaatgttgaaaatctaagccaggag
aatgttgctagaaccagtcttcttggtatttcctctaggaactcaactgaggcctctatt
ctcacacagagtacaagtcataagtggaacgtgaagatacattggattaatctttgtgac
cctattatgaatatttttcatgaaatccaaaagagctgtgtagccatcttggagaatatt
gctctcttacaaagtaaaggtacactgagtgttgtcgactatgctctgcatttttcaaag
ttgaagcttatggatctaataaaacactccggcaaatgtctgtccactttggagtgtgaa
gatgaaaatttcatgaattttattgctctgtatgccctgaagcagatggcctattacttg
tgttattctggaatctacacaactcatctatatgtgatgaatttagttcagagtgtgaaa
tttctcaaaatgagattgtccttactacagtcttcaattgaagatgcacacagtaaagca
gagaaggggcttatggaatcacatccttcccttcctattatggaaaggatcattactttg
agctcttctcgaaatggtaaaaaaacactaattgtggcagacaggatattctggttgcca
ttgaaaaagaagctggctaccatgggtatgctctattatgaatggggcattgatcgtatg
catttgagtcggcagaatacttttgaagacaaagaggaaccaaccctctctattttagag
gcacttctgaattttgattgcttgattatttcacctgagaacgtttggtcatcatttccc
tttaatgagttcagcatcatccttgaatatgggggtctatatgattcatctagggtatct
gttatctccacaacatttgttggtctaccttgcattgattttctcaaggttaatctggat
gatcttgatgtctctggcacactatgggatagctctgatgctcttgagcatcctgaagtt
gtaaaggaaggttctaatcaaactttccgtacctcacatgaggactttaactgctgccaa
tgggttaaactgttaaactatattccgccatcagaaaagggtgctcatagcacaacttct
aaagcttcagaagtagaagaagccagctctctgattgaagcagaatcacatgatcctatg
aagcttgggactcaatttacttcacgtcccaatttagttatcattgtgaacacgcagaat
cttgatagagaactgcttatatctcggagaagctcataccaaaggattcttgcaatggag
aaagaaggtgtgcaagttgtggagagagagatgcctgtgccagtggacctagtgttcagt
gctacaatgtgcttgttatggtatactgctaggaagcttggtatgaatgctccgataagg
gcagaaagctcttcatgcatgcctctgtgcatagagaatatagcttctgaactgttgatg
tctctaagcttcacattcagtgattgtatactgattttcgaaggggacagtatctttctt
ggagcagttatggagtcatcagatggactttatgctgcagcagctagcctgaatatgaat
ttgcagctgtttttttccagctcatctgatttaactgacgacataatcgagagcaccatt
agacattcggcaagattgaataaatgtttataccctgcaatgcttgaatctgaaacctta
gcagagtcatttcttacaagcttcccttctatcaacccactcttagctcatgcagtccta
tcatgtggtatcacgcttagggagttcctagaatggacacatgaacagagagttatggct
ttaagggattataatgtttctgaagaaagtgttcttctgtttagtgctttatgcaagtat
ggagatttgggagaatcaaaatcaggaacgactgattgttcctcactatcttctgcaatg
gatacagatagcagttacactaacaggcagtctcatcagaggccagaaattcagtcaatt
gacattttagaggttgaccacatgcatgtcatgccgtcaaagaagtacaaagcaggtgaa
ccaagtgtttccctgttgtatcagtcaaatgagggttctaatgtgaatgaactgcataaa
aaaatcttggaaggtagagagacaaagaaacaaagttatggattagtggaaccacagagg
gatccaaggcatggtttgggtactactctattcaaagaaattgattggggtgatctgaat
agtgctgaggatgctactaaaggttcagatgtttatagagtgcatcaaacattatcggaa
ggtagagggagaaagagccaaaattatgaagtactgaaatcacatctgggtgtgaagcag
ggcttgggttctactctattgaaagagatagatgaccgtgctagaactgagaatgcaaat
agaggttcacacattaatgaattccatcgaaaatcagtggaaggaggagagagaaaggaa
aaaaggcatgaatttgtgaaaccccatctgggtccaaagcaggggttggctactacatca
tcaaaagaaatagaatggattgacctcgatagaactgacgatgcacatgaggccattaga
actgaagtaattgaccttgagactgatttctttagtgataacatcttttctcccatgaaa
actgtggaagttttcactagaaataatgtagtaaaagaatctccatctgggaactctaat
gatatcagcaaattgatgtttgacccaagcaatcttcatggatttccgacctctgcagag
atcacctgtgattcagacacatggataccattcacagactccaaaaatttatttgaagag
aaaaattacaaaaaaccaaaaataaaagctgtcgtggatggtttgattaaccaacatgaa
gtagggatcttgccagatagcaagatggagcaaacatttctaaaagttccctttaaattg
ccactccaagaagaaggaagttcttctagttacatcaagaattcatttttgaaggcttcg
caattgccaagaccgcaacaagggtcaccctggactattgaattcctcaaccgaatcaag
gagaagtccaaaatgcataaaacacttcctctctgtaacacatatatgaacagccctggg
ggttcaaggagaatagacaaaggcttcaccaggaaaagtccatccattcttgaaggctat
cgttacaaaggtggaaaccaagcaaaaaaggcatccaaacagaagtttcagaaacgattt
caatctcctttggatttatcaccgagggagcagaagcagggaaatgtttcatcttacttg
gctccagcatggaccccactcgacaaaagagctcgacaggttctatctttcacaaggaat
ggagatgaaactcaaagtcgactaatctggagcgatggggccattaacaacctcagaaat
aagtttcaaagaggttcttga
DBGET
integrated database retrieval system
