KEGG   Amborella trichopoda: 18422955
Entry
18422955          CDS       T02990                                 
Name
(RefSeq) putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 isoform X2
  KO
K15505  DNA repair protein RAD5 [EC:5.6.2.-]
Organism
atr  Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:atr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:atr03400]
    18422955
DNA repair and recombination proteins [BR:atr03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    18422955
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C HIRAN UBA_RAD5A zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX zf-C3HC4_2 zf-RING_2 DEAD zf-RING_5 ResIII RING_XB3-XBAT31 GIP1_N Prok-RING_4 zf-C3HC4_4 Baculo_IE-1
Other DBs
NCBI-GeneID: 18422955
NCBI-ProteinID: XP_006827507
UniProt: W1NHF0
LinkDB
Position
Unknown
AA seq 1091 aa
MEDLREKVESIREILGAHLSEPEIFQALHLARGDTHSAVNIILDTKSSVRKTNSGVRIYA
ECDPQSQENPTQEDVPVKYEDFKVKNEEFGVKNGSFSVKSEGSVDFCFIEPENVHFPNAG
LENGYLGGFHDPYIKSKDEYLSQYQDLTKNPIHYIEDGSDGWNPATGKKSGKEMAGNGGT
PAELGDFPVEKDWFLVGGTVLSGLSTCKGRRLEVNEIVDFDFPKDRKRGAIVRQGASWKA
AAACSEIVRFSTKRSGEIGRLPTEWTRCLIPLINSSKVKIHGRCISAPEELCMMQEILLY
IGLYIHKSVFTKGDKGLWELTVPSKLDSTVHPVPTLFKLLKIKPFQKAEFTPEELNKRKR
SLNLQDGSDESALLMPPLKRISGITPLEGNNQEQALSDSVMSKLIGAADIYNLEERDPPS
TLKCILKPYQKQALYWMSELEKGIDAEKAAKTLHPCWEAYQINDKRASAVYVNVFSGEAT
THFPSALRIARGGILADAMGLGKTVMTIALILGNPGRGNLDNQKEALGNEHEMKKIGGIR
GEVEKGKSTRETPLRKGGGTLIVCPMALLGQWKDELEAHSELGSLSVFVLYGHDKTRDLN
VILDHNVVLTTYGVLSSAYKSESEGSVFHRVEWFRVVLDEAHTIKSSSSQQALAAFALVS
ECRWCLTGTPLQNKLEDLYSLLCFLHVQPWCNWAWWHKLIQKPYENGDERGLKLVKAILR
PLMLRRTKDSTDKDGRPILFLPPVEIETVECEQSEAERDFYEALFKRSKVQFDQYVAQGK
VLHNYANILELLLRLRQCCNHPFLVVSRGDQLSDLNKLADRFMTATTTNGGSVPSSVYVE
SVVKGLFEKGDAEEECPICFKSADDPVLTPCAHRMCRECLLSSWRALCVSGPCPVCRGVL
SRADLIACPTGGRFRVDVKNKWNDSCKISALLHCLVERSNSTKCIVFSQWTSFFDLLEIP
LKRKGIGFLRFDGKLGQKQRERVLKEFNESSSTTVLLMSLKAGGVGLNLTAASKVFLMDP
WWNPAVEEQAIMRIHRIGQKQKVLVKRFVVKGTVEERMQQVQARKQRMIEGALTDGEVRS
ARIEELKMLFR
NT seq 3276 nt   +upstreamnt  +downstreamnt
atggaagatcttagagagaaggtcgaatccattcgagagatccttggcgcccatttatcc
gaacccgaaatcttccaagccctccatctcgcgagaggcgacacccactctgctgttaat
atcatccttgacaccaaatcctctgtcagaaaaacaaattccggcgtcagaatctatgct
gagtgcgatccacaatcacaagaaaatcccacccaagaagatgttccagtgaaatatgaa
gacttcaaggtgaaaaatgaagagtttggggtaaaaaatggaagtttcagtgtgaaaagt
gaaggttctgtggacttctgttttatagagccagaaaatgttcatttcccaaacgcgggt
ttggaaaatgggtatttgggtggatttcatgatccatatatcaaatcaaaagatgaatat
ttgagccaatatcaagatttgacgaaaaatcctattcattatatcgaggatggatctgat
ggttggaatcctgcaacaggtaaaaaatctggcaaagaaatggctggaaatggtggaacc
ccggctgagttaggtgattttccagtagagaaagactggtttcttgtggggggaacagtg
ttgagtggtctttcaacttgtaaagggaggaggctcgaggtgaatgagattgtagatttt
gactttccaaaagataggaaaaggggggcgattgtgagacagggggcgagttggaaggcc
gctgctgcctgctctgagattgtgaggttttcaacgaagaggtcaggggagattggcagg
cttccaacagaatggacaaggtgtttaattcctctcataaactcatccaaagtaaaaatt
cacggccgttgcatatctgccccagaggagctttgcatgatgcaagaaattctattatac
atcggtctctatatccataagtcagttttcaccaagggtgataaaggtttatgggaactg
actgttccctcgaaattggattccaccgtgcatccagttcccactctgtttaaattgctg
aagatcaaaccatttcaaaaggcagaatttacccctgaggagcttaataagagaaaacgt
tcattgaatctacaggatggttccgatgaatctgctctgttaatgccacctttaaagcgc
ataagtgggattacaccattagaaggaaacaatcaagaacaggccttatctgattctgtc
atgtctaagctcattggagctgcagatatatataacttggaggaaagggatcctccaagc
acactaaaatgcatattgaagccataccagaagcaagctctttactggatgtctgaattg
gaaaaaggcattgatgcggagaaagcagcaaaaacacttcatccttgctgggaagcatac
caaattaatgataagagggcttcagcggtgtatgtgaatgtgttctctggggaggccact
acacactttcccagtgcactgcggatagccagaggagggatattagcagatgcgatgggg
cttgggaagactgtgatgacgattgccctcatacttggaaaccctggtagggggaaccta
gataaccaaaaagaagctcttggaaatgagcatgaaatgaagaaaatcgggggaataagg
ggcgaagtggaaaagggaaaatcaacaagagaaaccccactccgcaagggtggtggcact
cttattgtttgccccatggcattgttaggacagtggaaggacgaactagaagcccactct
gagctggggtcgttgtcagtctttgtgctctatggccatgacaaaacgagagacttaaat
gtaatactagatcataatgtggtgttaaccacatatggagtcttgtcttcagcatacaaa
tcagaatctgaaggaagtgtttttcatagagtagagtggttcagggtggtattagatgaa
gcacataccatcaagtcctcaagttctcagcaagcgttggcagcatttgcacttgtttca
gagtgtcgatggtgccttacaggaacccctcttcagaataagttggaggatctttacagc
cttctttgcttcttgcatgttcaaccctggtgcaattgggcctggtggcacaaactgatt
cagaagccttatgagaatggtgatgaaagaggtttgaaacttgttaaagctattttgagg
ccattaatgctgaggagaacaaaggacagtactgataaagatggaaggcccatccttttt
cttccaccggttgagattgagacagtggagtgcgagcaatctgaagctgagcgtgatttc
tatgaagctctgtttaaaagatccaaggtgcaattcgatcaatacgtcgcacagggaaaa
gtcctacacaactatgcaaacattctcgagcttctcctgcgattaagacagtgctgtaat
cacccattccttgttgtgagccgtggagaccaattgtcagacttaaacaagcttgctgat
cgcttcatgactgcaaccactacaaatggtggctcagtaccctcctctgtgtatgtggag
tcagtggtgaagggcctatttgagaaaggagatgcagaggaagagtgccccatatgcttc
aagtcagcagatgaccctgttcttactccttgtgctcatcgtatgtgccgtgagtgcctc
ctctcaagctggcgtgccctctgtgtatctggcccttgccccgtgtgccggggcgtgttg
agccgagctgatttgattgcttgcccaactgggggtcggttccgagtggatgtaaagaac
aagtggaacgattcatgtaagatctcggcccttctccattgtttggtcgagcgatccaac
agtacgaagtgcatcgtgtttagccagtggacgtcattttttgaccttcttgagatccca
ttgaagaggaagggcattgggtttctgaggtttgatgggaagcttggccagaaacagagg
gaaagggtgctcaaggaattcaatgaatcctcgagtactactgtgttgttgatgtcactg
aaggctggtggagttggtctgaatttgactgcagcatcaaaagtttttctaatggatcca
tggtggaatcctgctgtagaagagcaggccatcatgcgaatacatcggataggacagaag
caaaaggttttggtcaaacgttttgttgttaaggggaccgtggaggagaggatgcagcag
gttcaagcaaggaagcaaaggatgatagaaggggctctcaccgatggggaagtcagaagt
gccaggattgaagagctcaaaatgctcttcagataa

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