Amborella trichopoda: 18423057
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Entry
18423057 CDS
T02990
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
atr
Amborella trichopoda
Pathway
atr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18423057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18423057
03036 Chromosome and associated proteins [BR:
atr03036
]
18423057
Enzymes [BR:
atr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
18423057
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
18423057
mRNA degradation factors
5'-3' decay
Decapping complex
18423057
Chromosome and associated proteins [BR:
atr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
18423057
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
18423057
NCBI-ProteinID:
XP_006827696
UniProt:
W1NH37
LinkDB
All DBs
Position
Unknown
AA seq
459 aa
AA seq
DB search
MNNRRGYLPSYGGTPQRLPQQIVQRGPLQNQQQQQQWLRRDQVEEEKRVTSEDAASSSQD
WKAQLKIPPKDSRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIAL
TGSDILARAKNGTGKTAAFCIPALEKIDQNNNVIQVIILVPTRELALQTAQVCKELGKHL
KIQIMVTTGGTSLKDDIMRLYQPVHLLVGTPGRVLDLAKKGICNLKDCTMLVMDEADKLL
SQEFQPSVEQLIGFLPPNRQILLFSATFPVTVKEFKDKFLRKSYIINLMDELTLKGITQY
YAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQSH
RNRVFHDFRNGACRNLVCSDLFTRGIDIQAVNVVINFDFPRNSETYLHRVGRSGRFGHLG
LAVNLITYEDRFSLYRIEQELGTEIKPIPPQIDQAIYCK
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgaataatcgaaggggctatctcccatcttacggtgggactccacagaggcttccacaa
caaatcgttcagagagggccattacaaaatcaacagcagcagcaacaatggctcaggaga
gaccaagttgaagaggagaagagggttacctcggaagatgcagcttcaagctctcaagat
tggaaggcccaacttaaaattcccccaaaggattcacgctacaagacagaggatgtaact
gctacaaaaggcaatgagtttgaagactattttctgaagagggaattgctaatgggcata
tatgagaagggatttgaaaggccttcaccaattcaggaagaaagcatccctattgcgtta
actggtagtgacattcttgccagggcaaaaaacggaacggggaagaccgctgcgttctgc
attcccgccctagaaaaaattgatcaaaataacaatgttattcaagttattatattggta
cctacgcgagagttggcccttcagacggctcaggtgtgtaaagagcttgggaaacatttg
aagattcagatcatggtgaccactggaggaacaagtttgaaggatgatatcatgcgtctg
tatcaaccagtccatttgttagttggaacacctggaagggtacttgaccttgcaaagaag
ggtatttgcaatttgaaggattgcaccatgcttgttatggatgaggccgacaaacttttg
tctcaagaatttcaaccttcggtggagcagttgattggttttcttcctccaaatagacag
atcttattgttctcagcgacatttcctgttactgttaaggagttcaaagacaaatttctc
cggaagtcatacatcattaatctgatggatgaactaactctcaagggtataactcagtat
tatgcttttgtagaggaaaggcaaaaggttcactgcctcaacacccttttctctaagctt
caaatcaaccagtctatcattttctgcaactctgtaaaccgtgtagagcttctagctaag
aagattacagagctcggttactcgtgcttctacatacatgctaagatgttgcaatctcat
cgtaaccgggtcttccatgatttccgtaatggtgcatgtcgaaaccttgtttgttcagat
ttattcacaaggggtattgacattcaagctgttaatgttgtaatcaactttgactttcca
aggaactcagaaacttatctacacagggttggccgatctgggagatttggtcaccttggt
cttgctgtcaatttaatcacatacgaggaccgcttcagcttgtatcggattgagcaagag
cttggaactgaaataaagccaattcccccgcaaatagaccaggccatctattgcaaatga
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