Amborella trichopoda: 18423067
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Entry
18423067 CDS
T02990
Name
(RefSeq) WD repeat-containing protein RUP2
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
atr
Amborella trichopoda
Pathway
atr04120
Ubiquitin mediated proteolysis
atr04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
18423067
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
18423067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
atr04121
]
18423067
Enzymes [BR:
atr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
18423067
Ubiquitin system [BR:
atr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
18423067
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
18423067
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF4
Beta-prop_DCAF12
EIF3I
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_like
Beta-prop_RIG_2nd
WD40_CFAP43
Motif
Other DBs
NCBI-GeneID:
18423067
NCBI-ProteinID:
XP_006827710
UniProt:
W1NI32
LinkDB
All DBs
Position
Unknown
AA seq
433 aa
AA seq
DB search
MKNRDHPNSPKQEEEEEEEEEDEEDGKARCEWDFTLSALISPSHLADYSDTIAAIEFDHS
HCFIATAGKARKIRIYSLSTLCGTQENHHQQNQGQQLRTRHWDHNSAGDFYLCTPAKLSS
LKWRQDTSPSRVGCGDYDGVVTEYDLEQRVPVGERDDHGGRRVWSMDYSSHTPALGASGG
DDGAAHLWDTRLGTSNPPVASLRPGIGIGTGTGTGTGTGIVTYAPVCSIEFSPACHPLIA
IGSADKNVYLYDVRALGAGPLAILKGHARAVSYVRFLGEGSVVSAGVDGCLKLWDISELR
VVRTFEGHSNTKNFVGLSVWRTGGLLGCGSESNEVYVYDRRWGEPVWVQGLRPDGGEWVP
PHQPSGCETACGHEPSGCQRARGHEPSGCQRARGARFVSSVCWRQTRDEEYCTLVVGASY
GVLQVFTGNKRLA
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacagagaccaccccaatagccccaagcaggaagaagaagaagaagaagaagaa
gaagatgaagaagacggcaaggcgagatgtgagtgggacttcaccctctccgcactcatc
tcgccctctcatctggctgactactctgacacgattgctgctatcgaattcgaccactcc
cactgcttcattgccaccgccgggaaagcccgaaagataagaatctactctctcagcact
ctctgtggaacccaagaaaaccaccaccaacaaaaccaaggccagcagctcaggactagg
cattgggaccataattcagctggtgacttctatctatgcacaccagccaagctttccagc
ctgaagtggagacaagacacaagtccctcacgtgttggctgcggcgactacgacggtgtc
gtcacagagtacgatctcgagcaacgagtgccagtaggtgagcgtgatgaccatggcggt
cgccgggtgtggagcatggattactcatcccacactccagccctcggggcctccgggggt
gatgatggggctgctcacttatgggacacaaggttgggtacttccaatccaccagtggct
tcactgcgtcccggcattggcattggcaccggcaccggcaccggcaccggtacgggaatt
gtgacttatgctccggtatgctcaatcgagtttagtcctgcatgtcatcctctcattgcc
attggctctgcggacaaaaacgtctacttatatgatgttcgggcccttggcgcaggcccg
ctggcaatcctgaaaggccatgcacgcgcagttagttatgtgcgctttctcggagaaggc
tcagtggtttctgcgggagtggatgggtgcctgaagctgtgggacattagtgagctccgg
gttgtgcgcactttcgaggggcactccaacacaaagaacttcgtggggttgtcagtgtgg
aggactggagggctcctagggtgcggctctgagagcaacgaagtgtacgtctacgatcga
aggtggggagagccagtatgggtccaggggctcaggccggatgggggtgagtgggttcca
cctcatcaacctagcgggtgcgaaacggcttgtggtcatgaacctagtggttgccaaagg
gctcgtggacatgagcctagtgggtgccaaagggctcgtggggccaggtttgtgagtagt
gtttgttggaggcagactagggatgaggagtattgcacccttgttgtgggggcctcctat
ggagtcttgcaagtgttcacgggaaacaagaggttggcatga
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integrated database retrieval system
