Amborella trichopoda: 18423456
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Entry
18423456 CDS
T02990
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
atr
Amborella trichopoda
Pathway
atr03440
Homologous recombination
atr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
18423456
03460 Fanconi anemia pathway
18423456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
atr04121
]
18423456
03036 Chromosome and associated proteins [BR:
atr03036
]
18423456
03400 DNA repair and recombination proteins [BR:
atr03400
]
18423456
Ubiquitin system [BR:
atr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
18423456
Chromosome and associated proteins [BR:
atr03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
18423456
DNA repair and recombination proteins [BR:
atr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
18423456
FA (Fanconi anemia) pathway
Downstream FA components
18423456
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCA2
BRCA-2_OB1
BRCA-2_helical
BRCA-2_OB3
Motif
Other DBs
NCBI-GeneID:
18423456
NCBI-ProteinID:
XP_020530865
LinkDB
All DBs
Position
Unknown
AA seq
1443 aa
AA seq
DB search
MSTPKLQTWRIVPDPEKPRNWTFNGPESRPIPAQITTLVPQNCGLSLPSFADLLVQRSST
LLGGTNGNRRDRFSCIHGQENAQPDFTSGASLFRSGHGKPVGVAESSIRKAMAVLGGDDD
QFEHSKAKHFVMDRGSSILFGGTNSNRKDGFSCIQDQENDQLDFTSGAPLFRSGHGKPVG
VAESSIRKAMAVLGEGDDDQFEVSKAKHFVMDRGSTTFSRGINNNHSERLSGTGYRQNQR
SVLSAGAPMFTTGSGKPVGIAESSIRRAMSVLGEGDGTQLEVSKAKLLVVDKGSSTSFGV
FNYNDRFSGIQDREYQQLDVSSGAPMFRTGSGKPVGVAESSIKRALSILGEEGGSQFEVS
KEKHLVMHRGPVPKSKLDCSSSISEPVFKTGSGKVVHVSSTGLLKAKALLGLEEHWDNPH
NFQHFKNGMIMRGSNLQDGRHNSRHSEKFSSRAPEIINIENVGLGGNTMVSSKSQAPCQR
KGILLGNQLEEETSANPLVSKISDSGLKVPPIRFQTAGGRSISISSDALERAKSLLGESD
FRNPLCKENSDNTFFSFSKEVDYCDKTVLGRKDSSFGHVFQDTVLGEDLEAKDQSLLEAL
SNLNQSHIPLKTINFGLDLQQHVAPSNDIPGGILRSKNDSSSSNGSSTWQSDYNGVNDEN
YARIDVSQGKFLVPRKLSKGEFSSGPLVDISNNIHADCNDHPQRSLSKPVSGDKRRLGGK
NIISPFKRPRRSKFLPPLNSNIHIQAPGPRLPDCSTLPAQGYDSHKTNIRSCYPFQHKRK
TLEEFFGGPPSHWTLEGSNLPEKVKFMTADSAQNYLFNAAPGSEGNGVEMLHNMLVQAGG
SLQHATKKWVSNHYKWIVWKLACLEKGYPGNANGKYLTVANVLEELKYRYEREVNQGHRS
ALKKILEGSASVTSPMILCVSAIRSNIADDSNVADGPDRVEDPSVASKSHKFSYSHNTND
GRALKVELTDGWYSLNAVLDVPLSKQLRAGKLFVGQKLRIWGASLCNWVGPLSPLEISET
VSLLIHMNGTYRAHWASRLGFCRGNRFPLAFHCIKDAGGPVPMTLVGVTRVYPILYKERL
NQGGSIVRSERMETKSLQLYNQRRTIIAESVVSEAHKDNFGILNVHASDLDEGEEIFKMF
EKSAEPESLMATMNSEQLGALAAYQAKQEAIRQSEIQKKVEKALEEADLNSRKVTPFMKV
KVVGLINNASQKRTHPREGLITVWQPTEKQEVEIEEGQMYCVSGLTPLRNSISNIIHLHG
RGSATVWHHLKSSVNVHFEPFFTPRESILLSTLGQIPLASEFDFAGVVVFVGEPYVCGNH
KKQWVFTTDGSEAWSGSESDVLAQALLAISFSMPIADTGSFAPANYTLAGSTVGFCNLLK
RERDQSNNLWVAEATENSTYSFCFNLPGRSHLKESADNVRQWAKNSSLILDKLKQRILHI
IGI
NT seq
4332 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgccaaagttgcagacatggcggatcgttcctgaccctgaaaagcctagaaat
tggaccttcaatggtcctgagtctcgtcccattccagctcaaataactactcttgttcca
caaaattgtggcctttctctgccatcatttgctgaccttttggttcaaagatcttctaca
ctgcttgggggcaccaatggaaaccgcagagacagattctcatgtattcacggtcaagaa
aatgctcagccggatttcacttccggtgcttcattgttcaggtctggtcatggaaagcca
gttggagttgcagagtcctccatcagaaaagcaatggcggttctaggaggagatgatgac
caatttgagcactctaaagcgaagcattttgtaatggatagaggatcttctatactgttt
gggggcaccaatagcaaccgcaaggacggattctcatgtattcaagatcaagaaaatgat
cagttggatttcacttctggtgctccattgttcaggtctggtcatggaaagccagttgga
gttgcagagtcctccattagaaaagcaatggcagttctaggagaaggagatgacgaccaa
tttgaggtctctaaagcgaagcattttgtaatggatagaggatctacgacattttcccgg
ggcatcaataataatcacagtgaaagattatcaggaactggatatcgacaaaaccaaagg
tcagttttatctgctggggctccaatgttcacaactggttctggaaagccagttggaatt
gcagagtcttccattagaagggcaatgtctgttcttggagaaggagatggcactcaactt
gaagtctctaaagcaaaacttcttgtggtggacaaaggatcttcgacatcgtttggggtc
ttcaattacaatgacagattctcaggcattcaagatcgagaatatcaacagctggatgtg
tcttctggggctccaatgtttagaaccggctctggaaaaccagttggagttgcggagtct
tctattaaaagggcattatctattcttggagaagaaggtggtagtcaatttgaagtctct
aaagagaagcatttagtaatgcatagaggtccagttcctaaatccaaattagattgcagt
tcctctatttccgaacctgtattcaaaacaggatctgggaaggttgttcatgtgtcctcc
actggtcttcttaaagctaaggcattgttgggccttgaagaacactgggacaatccccat
aattttcaacattttaagaatggcatgatcatgaggggcagtaatttacaagatggaagg
cataattctagacattctgagaaattttcatcaagggcacctgaaatcatcaacatagag
aatgttggtttaggaggcaacacaatggtttcttcaaagagccaagcaccttgtcaaaga
aaaggcattcttttggggaaccaattagaagaagagacatctgctaatcctctggtttcc
aagatttctgattcgggcttgaaagtgcctcctatcaggtttcaaacagctggcggcaga
tctatttccatttccagtgatgcattggaacgtgcaaagagtcttcttggtgaatcagac
tttaggaatccattatgtaaagagaactcagataacactttcttttcattctctaaggaa
gtggattattgtgacaaaactgttctgggcagaaaagattcttcttttgggcatgtgttt
caagacactgtgttaggcgaagatttagaagcaaaagaccaatctcttttggaagctctt
tctaatctaaaccagtcacacattcctttaaagactatcaattttggccttgatttgcag
cagcatgttgctcccagtaatgatattcctggtggaatcttgagatcaaaaaatgatagt
tctagttcaaatggatcatcaacttggcaaagtgattataatggggtcaacgatgagaat
tatgcacgaattgatgtttcccagggaaaatttctagttccaagaaagctctcaaaggga
gagttctcaagtggtcccctagttgatatttcaaacaacatccatgcagattgcaatgac
caccctcagagatccctatcgaaacctgtttctggtgacaagagaagactaggagggaaa
aacattatctccccgttcaagcgtccacggcgctccaagtttttacctcctttgaacagc
aacattcatatccaggctccaggcccaaggttacctgattgctccacattacctgcccag
ggatatgactctcacaagacaaacatcagatcttgctacccatttcagcataagagaaaa
acacttgaagaattttttgggggccccccatctcattggacattggaagggagtaatttg
ccagagaaggtaaagtttatgactgcagatagtgcccaaaactatttattcaatgctgct
cctggatctgaaggaaatggagttgaaatgcttcacaacatgttggtccaagcaggtggt
tccttgcaacatgctactaaaaagtgggtatctaatcactacaagtggatagtttggaaa
cttgcttgccttgagaaaggttaccccggcaatgcaaatggcaaatacttgactgtagct
aatgttcttgaggagctaaaatacaggtacgagagagaagtaaatcaaggtcataggtcg
gcgctaaagaaaatattggaaggaagtgcatctgttacatctcctatgattttgtgtgtt
tcagctattcgttctaacattgctgatgattctaatgttgccgatgggcctgatagagtg
gaggatccttctgttgcctcaaaaagtcataagttttcttattcccataatactaatgat
ggtcgtgccctgaaagtagaattaactgatgggtggtattcattgaatgctgttttggat
gttcctctatcaaagcaactcagggctggaaaactttttgtgggtcagaaacttcggatt
tggggagcaagcttgtgtaactgggttggaccattgtctccactggagatttctgagact
gttagtttgcttattcacatgaatggcacatatagggctcattgggcaagtcgtttagga
ttttgtaggggaaatagatttccactggcttttcattgtattaaggatgctggaggtcca
gtacccatgacattagttggggtgacacgggtatatccaatattgtacaaggaaaggctc
aaccaaggaggctccattgttagatcagagaggatggaaacaaaatctttgcagctttac
aaccaaagacgcaccatcattgcagaaagtgttgtttcagaggcacataaagataatttt
ggcatattgaatgttcatgctagtgaccttgatgagggagaggaaatcttcaagatgttt
gagaaatctgctgagcccgaatcattaatggcaacaatgaattcagagcaacttggtgct
cttgcagcttatcaagcaaagcaggaggcaatcaggcaatcagagatacagaagaaagtg
gaaaaggctttagaagaggcagatctcaactcaagaaaagtgaccccttttatgaaagtc
aaagttgttgggctaatcaataatgcatctcagaaaagaactcacccacgggaaggcttg
atcactgtatggcaaccaaccgagaagcaggaggttgagattgaggaggggcagatgtat
tgtgttagtggactcactccattgcggaattccatttccaatatcatccacttacacggg
agagggtccgctactgtgtggcatcacttaaaatcatcagttaatgtacattttgaacca
ttcttcactcctcgagaatcaatattactatcgactttgggtcaaatccctctagccagt
gagtttgattttgctggtgtagttgtgtttgttggtgagccttatgtttgtggaaaccat
aagaagcagtgggtgttcactacggatggttcggaagcttggtctgggtcagagtctgat
gtgcttgctcaagctttgcttgctattagcttttctatgcccattgctgacacaggttct
tttgcgccagcaaattatacgcttgcaggctcaacagtgggattctgtaatctgttaaag
agagagagagaccaatcgaacaacctttgggtggcagaggctacagagaactctacttat
tctttttgtttcaatcttcctggtcgttctcacctcaaagaatcagcggataatgtgcgc
caatgggccaagaattcttctttgatactcgataaacttaaacagagaatacttcatatt
attggtatttga
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integrated database retrieval system
