Amborella trichopoda: 18423670
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Entry
18423670 CDS
T02990
Name
(RefSeq) uncharacterized protein LOC18423670 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
atr
Amborella trichopoda
Pathway
atr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18423670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
atr03000
]
18423670
03019 Messenger RNA biogenesis [BR:
atr03019
]
18423670
04121 Ubiquitin system [BR:
atr04121
]
18423670
Enzymes [BR:
atr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
18423670
Transcription factors [BR:
atr03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
18423670
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18423670
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
18423670
Ubiquitin system [BR:
atr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
18423670
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
Nup35_RRM_2
Rtf2
zf-UDP
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
18423670
NCBI-ProteinID:
XP_011627452
LinkDB
All DBs
Position
Unknown
AA seq
1028 aa
AA seq
DB search
MTTMSDEGERTCPLCTEEMDLTDQQLKPCQCGYEICVWCWHHIMDMAEKDDTEGRCPACR
TPYDKEKIVGMTVNCERMTELNHERKQKSQKAKSKNLEGRKHLSNVRVIQRNLVYIVGVP
NNLADEEILERKEYFGQYGKVLKVSITRPAGGSQYSLNNTCSVYITYAKEEEAVRCIQAV
HGFILDGKPLKACYGTTKYCHAWLRNMPCNNPDCLYLHDIGTQEDSFTKDEMVSNCARSQ
QLPSVSNHLQRRSGSVLPPPLDDFCCNPMATSGKPLVKPTGHTPVSHAKVSLSNGSAAKS
SVLPAAASWGLRVVQGRAAAQVPVKLKPSICNGPSGVATSSVSAVHADQGDTPISSSESQ
AMQSNSILGSFESSKEHILRSYQTCVFDVAVEAASDALSDPTTSKLSPHSFSLQDKTGFT
KLQASRDNEDIERESYGSSPDAAVNGCSAMEGHMQKLCYGMSSRNLKACVGSEKADVGNS
VNSVSVYDYLCSTTQTPEIQVDDTQQDISRNDFEDLSSEPLRHDAKISKGLCFVEESSEK
CADFYGQSSLGNEMDNDFQADGAHGFLNSEASSSLTYFPSSFSQLTAANHSTSGYWGPST
LSAICAEGVPQSSHHTEIDKPRSCATVQRDNIENPDLLSKLENCRSSHTSEGDIFDADRK
GSVNTRESNIIENIFSLDFDPFDDPLSSPHDLVKLLLNDSDKKSGSSTQSAAWKPQYNNQ
SRFSFARQEDCINQSSDIRTLWGDSGHMQSRHFDQQETMESSETYLNKSLNGVSALENFD
IFSSSRGYLSSNKVPVNSRSQISAPPGFSVPSHVPPPGFSSQERTDRPLDFTISSANQIL
ENISTTRNIYTNSQLNVSHGSSGDVELIDPAIMAVGKGKLPLGVARNPTLDRRAPFIPQP
SPLENDARFHLLMQNSISAHQQMRFPDSISDSFSNLTDPHLSSRFLEQSQAGLLSPFAQI
PFQNPTRSSHVANSQWEDWRGVHPVRNGGLVDVTKNERHRYSKYFPAYEEHKLHMPGSGD
VYNRAFEM
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccatgagtgacgaaggggaaagaacttgccctctttgcactgaggaaatggac
ttgaccgatcagcaattgaagccatgccaatgtggttatgagatttgtgtttggtgctgg
catcacataatggacatggcagagaaggatgatactgagggccggtgtccagcttgtcgc
acaccttatgacaaggaaaaaattgtaggaatgacagtgaactgtgaaaggatgacagaa
cttaatcatgagaggaaacagaagtcacagaaggcgaagtcaaaaaatttagaagggagg
aagcatctaagcaatgttagagtgattcagcggaacttagtgtacatagttggtgtgcct
aataatttggcagatgaagagattctcgagcgcaaggagtattttggacagtatgggaag
gttctcaaggtctccattactcggcctgctgggggcagtcagtattctcttaacaatacc
tgtagtgtatatattacgtatgcaaaagaggaggaagctgttcggtgtatccaagcagta
catggttttatattggatgggaagccattgaaggcatgttatggtaccacaaagtattgc
catgcgtggttaagaaatatgccttgtaacaatccagattgtttgtacttgcatgatatt
ggaacacaagaagatagcttcacaaaagatgagatggtttcaaattgtgcaagaagtcag
caacttcctagtgtttcaaatcatttgcaacggcgttctggaagtgttttgcctccaccg
ttggatgatttctgctgcaatcctatggctacttctggaaaaccgttggtcaagcctact
ggtcatactcctgttagccacgctaaagtttccctctctaatggtagtgcggcaaaatca
agtgttctcccagctgctgcctcttggggcttgcgtgttgtgcaaggaagagcagcagct
caggtgcctgtgaagctaaagccaagcatatgtaatggcccctccggggttgcaacatca
tcggtatcagcagtgcatgcagatcaaggggacacccctatttctagttcagaatctcaa
gcaatgcaatcaaacagtattttggggtcttttgaatcttctaaagaacatattctcaga
agttaccaaacatgtgtttttgatgttgctgtggaggctgcttcggacgcactttcagat
cctaccacttctaagctttcccctcattctttttctttgcaagacaagaccgggttcaca
aagttgcaggcttctagagacaatgaagacattgagagagagtcatatggctcaagtcct
gatgcagctgttaatggatgttcagctatggagggacacatgcaaaagttatgctacgga
atgtcctcgaggaatctcaaggcatgtgttggaagtgaaaaggctgatgttggcaatagt
gttaattcagtttcagtttatgattatctttgctctaccacccaaacaccagaaattcaa
gttgatgatactcaacaggatatttctagaaatgattttgaggatttgtcctctgaacca
ttgcggcatgatgccaaaatatctaaaggtctatgttttgttgaggagtcatctgaaaag
tgtgcagatttttatgggcagtcttcactgggtaatgaaatggataatgatttccaagct
gatggtgctcatgggtttctgaactcagaagcttcttctagtttgacatattttccttct
tcattcagtcaactgactgctgcaaatcattctacttctggatactggggccctagtacc
ttgagtgctatttgtgcagaaggtgttccacaatcatctcatcatactgaaatcgacaag
cccagaagctgtgcaactgtacagagggacaacattgaaaatccagatctgctttctaaa
ttggagaactgtaggtcatcacatacatctgaaggtgacatttttgatgccgacagaaag
ggctctgtaaatacgagggaaagcaacatcatagaaaatatattttccctggattttgat
ccttttgatgatccattatcttctcctcatgatttggtgaaattattgctcaatgatagt
gacaaaaaaagtggttcgtcaacacaatccgccgcttggaaacctcaatacaataatcag
tctaggttttcttttgcaaggcaggaagattgcataaatcaatcaagtgatataagaaca
ttgtggggagatagtgggcatatgcagtcgagacattttgatcaacaggaaactatggag
agcagcgagacatatttgaataaatctctaaatggtgtttctgccttggagaattttgat
attttctccagcagccgcggttatctttcttctaataaggttcctgtgaattctagatct
cagatttcagctccacctggattttctgttccaagccatgtaccgcctcctgggttttca
tctcaagagagaacagatcgacctttggattttaccatttcttctgcaaaccaaatactc
gaaaatatatcaacgacaagaaatatatacacaaactcacagctcaatgtgagccatggt
agctctggtgatgttgaacttatagatcctgcaataatggcagttggtaaggggaaactg
cctttaggagtagcgagaaaccccactttggatcgtagggctccttttattccgcagccc
tctcccttagaaaatgatgcaaggtttcatttgctgatgcaaaattccatctctgcacac
cagcaaatgagatttcctgactcaatcagcgacagcttttcaaacctaacggaccctcac
ctttcctcgaggttcttggagcaaagccaagcaggtctactctccccctttgcgcagata
ccattccaaaatccaaccagaagttcccatgtggcaaattctcagtgggaagattggagg
ggagttcaccctgtcaggaatggcggcttggtagatgtcaccaagaacgaaagacatagg
tatagtaaatactttccagcctacgaggagcacaagcttcacatgcctggttcaggggat
gtctataacagggcatttgagatgtga
DBGET
integrated database retrieval system
