Amborella trichopoda: 18423896
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Entry
18423896 CDS
T02990
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
atr
Amborella trichopoda
Pathway
atr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18423896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18423896
03041 Spliceosome [BR:
atr03041
]
18423896
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
18423896
Spliceosome [BR:
atr03041
]
Complex B
Other components
Prp19-related factors
18423896
Complex C
18423896
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
Mad3_BUB1_I
TPR_19
TPR_2
TPR_12
NRDE-2
PPR
Motif
Other DBs
NCBI-GeneID:
18423896
NCBI-ProteinID:
XP_006828554
UniProt:
W1NL76
LinkDB
All DBs
Position
Unknown
AA seq
929 aa
AA seq
DB search
MDLFYPSKDDLPYEEEILRNSLSLKHWWRYLIALKDAPFKKRVVIYERALKALPGSYKLW
HAYLRERLELVRGLPVVHSQYETLNNTFERALITMHKMPRIWILYLQILTDQKFLTRTRR
TFDRALCALPVTQHDRIWEPYLVFVSQKGIPVETSLRVYRRYLKFDLNHIEDFIKFLQNS
KLWQEAAERLAEVLNDDKFYSIKGKSRHTLWLELCDLLTRHAEEVSGRKVDAIIRGGIRK
YTDEVGRLWTSLADYYLRRGLYEKARDIYEEGMTTVVTVRDFGMIFDSYTQFEESMVVAR
MESLNLDDDENEGGNHRKKDENEGSEKSGVSSKLEDDNGQDPRLLVDRLSKKSFDGFWLN
DVKDIDLRLARLENLMDRRPELVSSVLLRQNPHNVPEWHNRAKLFKDKPTRQILTFTEAV
RTVDPMKAVGKPHTLWVSFARLYEKHNDLANTRVIFEKAVQVNYKALDDLASVWCEWAEM
ELRHKNSRGALELMRRATTKPSVEIKRRVVADGNEPVQMKLHKSLKLWAFYVDLEESLGN
LESTRAVYERILDLKIATPQIIMNYALLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVT
YLSKFVKRYGKEKLERARELFEQAVEQAPAEHVKPIYLQYAKLEEDYGLAKRAMKVYDQA
AKAVPDNEKMNLYEIYIARAVEIFGVPRTREIYEQAIESGLPDKDVKTMCMKYADLEKNL
GDIDRARGIYIFASQFADPRSDVAFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTH
FILPEYLMQKDQKLVLEETVDTLKRAGVPEDEMAVLERQLAPPASGTTTKDGMRAVGFVS
AGVESQPGVTRTADGGRKVTANPEDIELQDESDTEEDNDKVEVAQKDVPAAVFGELAKKM
EKGRDSESIDSGGNGPFGALERIKRQRRH
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggatctcttctaccctagcaaggatgatttaccttatgaagaagagatccttagaaat
tctctgagcctaaaacattggtggcgctatctcatagctctgaaagatgccccattcaag
aaacgagtagtgatttacgaaagggcactgaaagcgctacctggaagttacaaactttgg
catgcttaccttagagagaggctcgaactggtaaggggcctccctgttgttcattcgcaa
tacgaaaccctgaacaacacgttcgagagagctctgatcactatgcacaagatgcctagg
atatggattttgtatcttcagatcctcacggatcaaaagttcttaacaaggactcgaaga
acctttgatcgagctctttgtgcattgcctgtcacccagcatgatagaatttgggagccc
tatctggttttcgtgagccaaaaggggatccctgtagagacctctcttagggtttatagg
cgatacttgaaatttgacctgaaccacattgaggatttcatcaaattccttcagaattct
aagctttggcaagaagcagccgagagattagctgaggtgctcaacgacgataaattctat
tcgatcaaagggaaatcaaggcatacgctatggctcgagttatgtgacctgctcaccagg
catgctgaagaggtttcgggtcgtaaggttgatgccattataagagggggaatcaggaaa
tacactgatgaagttgggcggctttggacttcgcttgctgattattacttaaggagggga
ttgtatgagaaggcaagggacatttatgaagaggggatgaccactgttgtgactgtgagg
gattttgggatgatcttcgattcttatacccaatttgaagagagcatggtggttgccaga
atggaaagcttgaacttggatgatgatgaaaatgagggcggtaatcatcggaaaaaagat
gaaaatgaaggcagtgaaaaaagtggggtaagctcaaaactagaagatgacaatggccaa
gaccctagattattggttgatcggcttagtaagaagagctttgatggcttctggcttaat
gatgtaaaggatatcgacctccgattggcgaggctagagaacctcatggatagaaggcct
gagcttgttagtagtgttttactgagacaaaatcctcataatgtgcctgaatggcataat
agagcaaagctcttcaaagacaaacccactagacaaatacttacattcaccgaggcagtg
aggacagtggatcctatgaaagcagtggggaaacctcacactttgtgggtttcatttgct
cgtctttatgagaaacacaatgaccttgcaaatacacgggtgatatttgagaaggctgtt
caggtcaactacaaagcattggatgatttggctagcgtttggtgtgagtgggcagagatg
gagttgaggcacaagaattctagaggggcattggagctcatgaggcgggcaacaacaaag
ccatcagttgagatcaaacgtcgagttgttgctgatggaaatgagccagtgcagatgaag
cttcacaaatcattgaagctctgggccttttatgttgatttggaagagagtctcggaaat
ttggaatcaactagagccgtgtacgagcggatacttgatctgaaaatagctactccccaa
attataatgaactatgcattgcttctagaggagaataaatactttgaagatgcatttaag
gtttatgaaagaggagttaagatttttaaatatccacatgtcaaggatatctgggtcaca
tatctttcaaagttcgtgaaaagatatggcaaggaaaaattagaacgtgcaagagagtta
tttgagcaagcagttgagcaggcacctgcagagcacgtgaagcccatatatctacaatat
gcaaaactcgaagaggactatgggcttgcaaagcgtgcgatgaaagtttatgatcaggct
gctaaggctgtcccagacaatgaaaaaatgaacttgtatgagatttacatagcacgtgct
gtagaaatttttggtgttccaagaacgagagagatatatgagcaggctattgagagtggt
cttccagacaaagatgtgaaaaccatgtgcatgaagtatgctgatctcgagaaaaatttg
ggagatatcgatcgtgctcgaggcatttacatatttgcatcacaatttgctgatcctcgc
tctgatgtcgccttctggaataaatggcatgagtttgaggtgcaacatggcaatgaagac
accttcagagaaatgcttcgtatcaaacgcagtgtctcagcaagctacagccagacgcat
tttatcctccctgagtatttgatgcaaaaggatcagaagctcgttctcgaggaaacagta
gacacactaaagcgagctggtgttcctgaggatgaaatggctgtcttagagagacaatta
gccccaccagccagtggaacgactacaaaggatggaatgagagcagtgggttttgttagt
gctggagtggaatcacaaccaggggttacccgaactgctgatggtggaagaaaggtaact
gcgaatcctgaggatatcgagttacaagatgagagtgatacagaggaagacaatgacaaa
gttgaagtggcccaaaaagatgtccctgctgctgtttttggtgagcttgcgaaaaagatg
gaaaaagggagagattctgaatccatagatagtgggggcaatgggcccttcggtgctctt
gagagaataaagagacaaagaagacactag
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integrated database retrieval system
