Amborella trichopoda: 18423938
Help
Entry
18423938 CDS
T02990
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
atr
Amborella trichopoda
Pathway
atr03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
18423938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atr03021
]
18423938
03019 Messenger RNA biogenesis [BR:
atr03019
]
18423938
Transcription machinery [BR:
atr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
18423938
RNA polymerase I system
18423938
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
18423938
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
Spt5-NGN
KOW2_Spt5
KOW
KOW4_SPT5
Spt5_N
KOWx_SPT5
KOW7_SPT5
SH3-B_UBE2O
DUF4438
NUMOD3
Motif
Other DBs
NCBI-GeneID:
18423938
NCBI-ProteinID:
XP_020532009
LinkDB
All DBs
Position
Unknown
AA seq
568 aa
AA seq
DB search
MGIFIKAVATMELDYLIQSEGGEKNNLPLIFYGNCEPNQFIDDSAKLDESEKRRRMKISK
ANKGNVSMNKGRKRRPDFIDMGKELQDEDEWRVHRRPFLPREEEQDVEDLERLIKKKYGR
SDHLKHEEETTQVVQQALLPSVKDLKLWTVKCANGHEREVAFCLMEKCMDVQSQGIKQQI
KSVITLDYLTNYIYIEADKEAHVKEACKGMQHIYSNTKPMLVPIKEMTDVLSVKSKSVEL
SKDTWVRLKLGTYKGDLAKVLDVDNVRQRVTIKLIPRIDLKALANKLEGNEVGKKKKNFV
PPPRYMHIPVERKQDAITGEYFETIDGMMFKDGYLYKTVSMKSISSQNIQPSFDELEKFR
KPGKDSDGDMAGLSTVFANRKKGHFMKGDAVIVVRGDIKNLMGWVEKVEEESVYIRSNIP
GFKEFLAVNEKELCKYFKPGDHVKVVSGAQEGATGMVVKVEGHVLIISSDTTKEGIRVFA
DIVVESSEITFGITKLGDYVLHRLMQMDNSSYGVIIRVEIPERAEVVWVKSREIRKKIKR
KRSTQDRYGSTVSLKDVVRIHEGEDSNI
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggggattttcattaaggctgtggccacaatggaattagactatttaattcagagtgaa
ggtggagagaaaaataatttaccattgattttttatggaaattgtgagccgaatcagttt
attgatgattctgctaaactggatgaaagcgagaagcggagacgaatgaaaatatcaaaa
gcaaataaaggaaatgtatccatgaacaaaggccggaaacgcagaccagattttattgat
atgggaaaggagttgcaagacgaggacgaatggcgagtgcatcgtcggcctttccttcca
cgagaggaagaacaggatgtggaagaccttgaaaggttaattaagaaaaaatatggtcga
tcagatcatttaaaacacgaggaggagactacacaggttgtgcaacaagctcttttgccc
tcagtgaaagatctaaagctgtggacggtcaaatgcgcgaatggccatgaaagagaggtg
gctttctgcttgatggagaaatgtatggatgtgcaatctcaaggaataaaacaacagata
aagtcggttattacattggattatttgacgaattatatatacattgaagcagacaaggaa
gctcatgtcaaggaggcttgtaaaggaatgcaacacatctattcaaataccaaaccgatg
cttgtaccaatcaaagagatgacagatgttctgtcagttaagagtaaatctgttgagctt
tcgaaggatacatgggtgcgtctgaaactcggaacttataaaggcgatctggcaaaggtt
ttagatgttgataatgtgaggcaaagagttacaataaagcttatcccaaggatcgacctc
aaagctttggctaacaaattggagggcaacgaggtcgggaagaagaagaagaactttgtt
cctccaccacggtatatgcatatccccgttgagcgaaagcaggatgcaattacgggggaa
tactttgaaactattgatgggatgatgttcaaagatggctatctttataaaactgtgtca
atgaagtctattagttcccagaacatacaacccagttttgatgaactagagaagttccgg
aagcctggaaaagattcagatggcgatatggccggtttgtcaaccgtgtttgcaaataga
aaaaagggccattttatgaaaggagatgcggtaatcgtcgtccgtggtgatatcaagaat
ctgatgggatgggttgagaaggttgaggaagagagtgtctacataagatcgaacatccca
ggcttcaaagaattcctggctgttaatgagaaagaactctgcaaatactttaaacctggt
gaccatgtgaaggtagtctcaggtgctcaggaaggagctaccggtatggttgtcaaggtg
gagggacatgttctcatcatctcatcggacaccaccaaggaaggtatccgagtttttgct
gatattgtggtggaaagttctgaaataactttcggtattacaaaacttggggattatgtg
ttacatcgtctaatgcaaatggataactccagctatggtgtcatcatacgtgtagagatt
ccggagagggcagaggttgtttgggttaagtcaagagagattagaaagaagataaagcgg
aagcgtagtacccaagatcgctatggtagcacagtatctttgaaggatgttgttaggatt
catgagggagaagattctaatatctaa
DBGET
integrated database retrieval system
