Amborella trichopoda: 18424189
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Entry
18424189 CDS
T02990
Symbol
RPB1
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1 isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
atr
Amborella trichopoda
Pathway
atr03020
RNA polymerase
atr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
18424189 (RPB1)
09124 Replication and repair
03420 Nucleotide excision repair
18424189 (RPB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atr03021
]
18424189 (RPB1)
03400 DNA repair and recombination proteins [BR:
atr03400
]
18424189 (RPB1)
Enzymes [BR:
atr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
18424189 (RPB1)
Transcription machinery [BR:
atr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
18424189 (RPB1)
DNA repair and recombination proteins [BR:
atr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
18424189 (RPB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
MIF4G_like_2
G1_gp67_C
Motif
Other DBs
NCBI-GeneID:
18424189
NCBI-ProteinID:
XP_006828844
UniProt:
W1NM08
LinkDB
All DBs
Position
Unknown
AA seq
1844 aa
AA seq
DB search
MDMRFPYSPAEVAKVRVVQFGILSPEEIRNMSVVEIQHSETMERGKPKPSGLSDPRLGTI
DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSRILADEEDHR
FKQALKIRNPKTRLKKVLDCCKNKTKCEGGDDIDEDQAQDSEEVVKKKRHGGCGAQQPKI
TIEGMKMVAEYKLPRKKNDEQEQMLPEPVERKQQLAAEKVLNVLKRITDEDCQLLGLNPK
YARPDWMILQVMPIPPPPVRPSVMMDTSSRSEDDLTHQLAMVIRHNENLKRQEKNGAPAH
IISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY
IIREDGQRLDLRYLKKSGDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP
YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV
QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPK
QINLIRYSAWHSESESGFITPGDTCVRIERGELLSGTLCKKTLGTSSGSLIHVIWEEVGP
DAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQE
KQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS
QMTACVGQQNVEGKRIPFGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG
GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE
SQKLDSLKMKRAEFENVYKYEIDQENWSPSYMLPEHVEDLKTIREFQNVFDAEVQKLEAD
RHQLGTEITTTGDNSWPMPVNLKRLIWNAQKMFKVDLRRPSDMHPMEIVEAVDKLQERLK
VVPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLV
APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV
YLKHEVNKTKEKAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVRSYYEMPD
EEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI
RIMNDEAPKGELQDESSEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINKFDENEG
FKPEIEWMLDTEGVNLLAVMCNEEVDATRTTSNHLIEVIQVLGIEAVRRALLDELRVVIS
FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE
ADHLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGMDFGMTPSRSPMT
GTPYHEGMMSPYLLSPNMRSSPITDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPSSPGYS
PTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPAYSPTSPVYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSRSYSPTSPS
YNPPSAKYSPSLVYSPSSPRMSPSSPYSQTSPNYSPTSPSYSPTSPSYSPPSPSYSPSSP
PEYSPSSPNYSPSQGYSPTSPGYSPSSTSQYTPQFSNQDDGSTR
NT seq
5535 nt
NT seq
+upstream
nt +downstream
nt
atggatatgcgattcccttattcaccggctgaggtcgcaaaggtgagggtggtgcagttt
ggcatcctcagccctgaagagatcagaaatatgtcggtggtggaaatacagcacagtgag
acaatggagagggggaagccaaagcccagcggtctaagtgaccctaggcttggcaccatt
gaccgaaagatgaagtgtgatacttgcacagcaaacatggcagaatgccctggtcacttt
gggcatctagagcttgcgaaacccatgtttcatattggctttctcaagactgttcttagc
attatgcgctgtgtctgtttcaattgctctcgtatacttgccgatgaggaggaccataga
ttcaaacaggcactgaagataagaaaccctaaaactagactcaagaaggttttggattgt
tgtaagaacaaaacaaaatgtgaaggtggtgatgacattgatgaggaccaagctcaagat
tcggaggaggtggtgaagaagaagagacatggaggttgtggtgcacaacagccaaaaata
actattgaaggtatgaaaatggttgctgaatacaagcttccacgcaagaaaaatgatgaa
caggaacaaatgcttcctgagccagttgagaggaagcagcagcttgctgcagaaaaagtt
ctaaatgttcttaagaggataactgatgaagactgccaattattaggcttgaatcccaaa
tacgcccgtccagattggatgattttacaagttatgccgatccctcctcctcctgtgaga
ccttctgtaatgatggatacctcatcacggagtgaggatgatcttactcatcagctagct
atggtcattagacacaatgagaatcttaaacggcaggaaaaaaatggagccccagcgcat
attatctctgaatttgctcagctattgcagttccacgttgctacatactttgacaatgag
ctccctgggcagcccagggccacacagcgatctgggcgtcccatcaaatctatatgcagc
aggttgaaggccaaagaagggcgtatcaggggtaatttgatgggaaagcgtgttgatttt
tcagcgcggacagtcataacgcctgatccaacaattaacattgatgaacttggagtgcct
tggagtattgcgctcaacttaacatatccagaaacagtcaccccatataacatagagaga
ttgaaagagcttgtagaatatgggcctcatccccctcctggcaaaactggtgccaagtac
attataagggaagatggccagaggctggatctccgttacttgaaaaagagcggtgatcac
catcttgagttgggatacaaggtggagaggcacttgaacgatggagattttgtgctcttt
aacaggcaacccagcttgcacaaaatgtccattatgggtcatagaatcaaaatcatgcca
tactcgacttttcgcttgaacctgtctgtgacttcaccatataatgctgatttcgatgga
gatgaaatgaatatgcatgtccctcagtcatttgaaacgagagcagaagtgctcgagttg
atgatggttccaaaatgcatagtctcccctcaatctaatcggccagtgatgggcattgtc
caagatacactcttgggatgtaggaagatcaccaaaagggatacctttatcgaaaaggat
gtcttcatgaacattctaatgtggtgggaggattttgatgggaaaatacctgctccagct
attttgaagccaagacctctttggactgggaagcaagtattcaatcttatcattcccaaa
cagattaatctgataaggtactcagcatggcactcagaatcagaatcgggctttataact
cctggggatacctgtgttcgaatagaaagaggggagcttctttctggaactctttgcaag
aagactcttgggacatcatctggaagtcttattcatgttatctgggaagaggttggacca
gatgcagcccgtaagtttttggggcatacacagtggcttgttaactactggcttttgcag
caagcgttcagtattggtataggggatacaattgccgatgctgcaaccatggagaaaatc
aatgaaaccatttccaaagctaagaatgaagtcaaagaactcatcaaagctgcacaagag
aaacagttggaggctgaacctgggcgaactatgatggagtcattcgagaacagagtcaac
caggtgttaaataaggctcgtgatgatgctggtagcagtgcccagaagagtttatctgag
agtaacaacctgaaagctatggtcacagcaggttcgaaaggaagtttcatcaacatttca
cagatgactgcttgtgtggggcagcaaaatgtcgagggaaagcggatcccgtttggattc
aatgaccgcacactaccccattttacaaaagatgattatggtcctgaaagtcgtggcttt
gtggagaattcataccttcgtggtcttaccccccaagagttctttttccatgccatgggt
ggtagagaaggtctaatagacactgctgtgaaaacttctgagactgggtatatacagagg
cggcttgtaaaggctatggaggatattatggttaaatatgatggaactgtgaggaactcc
ttgggagatgtcatccaatttctttatggggaggatggtatggatgctgtttggattgag
tctcagaagcttgattcattgaaaatgaagagagctgagtttgaaaatgtctataagtat
gagattgaccaagagaactggagcccaagctatatgttgcctgagcatgttgaagatttg
aaaaccatccgggagttccaaaatgtgtttgatgctgaagtccagaagctagaagctgac
aggcaccagttgggcactgagatcaccactactggtgataactcttggcccatgcctgtg
aatctcaagaggctgatttggaatgctcagaaaatgtttaaggttgatttaagaagacct
tctgatatgcacccaatggagattgtggaagcagttgataagcttcaggaaagacttaaa
gttgttccaggtgatgacctgatgagtatagaggctcaaaagaatgctacactctttttc
aacatactccttcgtagtacttttgctagcaagcgtgtattgaaagaatataggctcact
cgtgaagcttttgattgggttattggtgagatagagtctagattcttgcagtctctggtg
gcaccaggtgagatgattggttgtgtcgccgctcagtccattggtgaacctgctacgcag
atgaccctgaacacctttcactatgctggtgtgagtgcaaagaatgtcacacttggtgtt
ccgaggttgagggaaatcataaatgtcgctaagaaaattaaaactccatcattatcagtt
tacctaaagcatgaagtcaacaaaaccaaggagaaagccaagaacgttcagtgtgcttta
gaatacaccacgcttcgcagtgtgactgaggcaacagaagtttggtatgatcctgacccc
atgagcactattattgaagaggatgttgatttcgtgaggtcttactatgaaatgcctgat
gaagaggtcgccccagagaaaatctcgccttggttgctccgtatagaattgaaccgagaa
atgatggtggataagaaattgagcatggcagacattgcagagaagattaatctcgaattt
gatgatgatttaacctgtatcttcaatgatgacaatgctgaaaagctcattctacgaatc
cgcatcatgaatgatgaggccccaaaaggggagctccaagatgagtcctctgaggatgat
gtcttcctcaagaagattgagagcaacatgctcactgaaatggcactccgtggcatacct
gacattaacaaggtgttcatcaagtccggtaaaatcaacaaatttgatgaaaatgaaggg
tttaagcctgagatagagtggatgcttgacactgaaggggtcaatctcttggctgttatg
tgcaatgaggaagttgatgccacaaggaccacaagtaaccacttgatcgaagtgattcaa
gttcttggaattgaggcagtgaggagagctctattggatgagcttcgggttgtgatatca
tttgatgggtcttatgtgaactataggcatcttgccattctttgtgacaccatgacatat
cgtggccatttgatggccataacccgtcatggcattaaccgaaatgatacaggccccatg
atgagatgctcatttgaagagactgtggatatccttttggatgctgcagtatatgcagag
gctgaccatttgaggggtgtgactgaaaatatcatgcttgggcagcttgctcccattgga
actggagattgcgcgttgtatctgaacgatcagatgcttcaacaagccattgaactccag
cttcctagctacatggaaggcatggattttggcatgacgccatctcgctcacccatgaca
gggaccccatatcatgaaggcatgatgtcaccttatcttctcagtccaaacatgcgatcc
tcaccaataactgatgcccaattctctccttatgtgggtggtatggcattctcaccatca
tcatcaccaggatatagcccttcatcaccaggctacagtccatcatctccaggatatagt
cccacatctcctggctatagccccacatctccagggtatagccccacatcccccggttac
agcccaacctctccgacgtatagccctagctctcctggctatagcccaacttctcctgct
tattctcccacaagcccatcttattctcccacttcaccgagttatagccccacgtcacca
agctatagccccacatcccctagctatagccccacctcaccgagctatagtcctacatct
ccggcctatagtcctacgtctccggtttatagccctacctctccagcctatagccctacc
tcgccagcctacagcccaacttcgcctgcttatagcccaacctcgccttcttatagccca
acttcaccttcctatagccctacatcaccttcctatagcccaacctcaccttcctatagc
ccaacctcaccttcatacagtcccacttcacctgcttatagccccacttctcctggttat
agccctacatcgccaagctatagtccgacctcccgaagctatagcccaacttctccgagt
tacaatcccccttcggcgaagtatagtccctctcttgtttattctccaagcagtccaaga
atgtctccttccagtccttacagccaaacatctccaaactacagcccaacttcaccctca
tattcaccaacatctccatcatactccccgccaagtccatcatatagccctagcagccct
cctgagtacagcccaagttctccaaattacagtccaagtcagggttactcgccaacgtcc
cctggttactctccatcatccacgagccaatacacgcctcagttcagcaaccaggatgat
gggagcactagataa
DBGET
integrated database retrieval system
