Amborella trichopoda: 18424523
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Entry
18424523 CDS
T02990
Name
(RefSeq) RNA-binding protein 39 isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
atr
Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atr03041
]
18424523
Spliceosome [BR:
atr03041
]
Common components
Common spliceosomal components
General mRNP proteins
18424523
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_7
RRM_8
Motif
Other DBs
NCBI-GeneID:
18424523
NCBI-ProteinID:
XP_006829172
UniProt:
W1NM28
LinkDB
All DBs
Position
Unknown
AA seq
641 aa
AA seq
DB search
MDFDEYEYLEKTVENPELSKKSLNGEVIKSGGDGDCKNSRGREDESGRETELRSTKRARS
EEGSHENGRSSRDDERERERHRFERDREREKGRDERDREREKGRDEKDREREKGRDEKDR
EREKGRDEKDRKRSSKEHSDRSSRDRDRAWERDRNRDRGRGRVREDRNGREKDSERGRDI
YKERDREGERERESEQERSRRSSSNSGKHRDRDREAEREKELTERDKDKDIRDRDSRHFK
DKKEQPEPEADPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGV
GYIEFYDAMSVPMAIALSGQMLFGQPVMVKPSEAEKNLVQPTPAGGQGGLIGPYSGGARR
LYVGNLHFNMTEDQLRQVFEPFGHVELVQLPHDPETGHFKGFGFVQFARLEDARAAQSLN
GQLDIAGRTIKVSALSDQVGMQDVGANAADFDDDDDGGLSLNARSRAMLMQKLDRSGAAT
SIAGSLGTPAVTGPAVSLPLPAANLLGSAPLVSPLISTLGQPSVAGLSLPIAAAIASPVI
SIGVPSECLLLKNMFDPKAETEPDFDVDIKEDVQEECSKFGTLKHIFVDKISEGHVYLRF
DSATAAIGAQRAMHGRWFAGKMITATFMLPQNYEAKFPNSK
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atggattttgatgagtatgagtacctagaaaaaactgttgagaaccctgaattgtcaaag
aaatctcttaatggagaagtcataaagtcaggaggtgatggggactgcaaaaactcaagg
ggccgggaagatgagagtggccgagaaactgagcttaggtctactaagagggcgagatca
gaggaaggatcgcatgagaatggaaggtcttctcgtgatgatgagcgtgagcgtgagcga
cacagatttgagagagatagggagagagaaaaaggccgagatgagagagatagggagaga
gaaaaaggccgagatgagaaagatagggagagagaaaaaggccgagatgagaaagatagg
gagagagaaaaaggccgagatgagaaagataggaagaggagcagcaaagagcattctgac
cgaagctcaagggatagagatagagcttgggaaagagacagaaatagagatagagggaga
ggcagagtcagggaggacagaaatggaagagagaaggatagtgagagggggagagatata
tacaaggaacgtgatcgtgaaggggaaagggagagggagagtgagcaagagagatcacgc
agaagcagcagcaattctggaaagcaccgtgatcgtgatagggaggctgaacgagaaaaa
gagttgacagaaagagacaaggataaggacataagagatagagacagcaggcacttcaaa
gataagaaggaacaaccagaacctgaagctgaccctgaacgagatcaaagaactgtcttt
gcataccagatttgcttgaaggctgatgaaagggatgtttatgaattcttttcaagggca
ggcaaggtaagggatgttcgtcttatcatggaccgaaattcaagacgttcaaagggagtt
ggatatattgaattttatgatgcaatgtctgtgccaatggcaatagcactttctggtcaa
atgctatttggacaaccagtgatggttaagccatctgaggctgaaaagaatcttgttcaa
cctactcctgcaggtggacaaggtggccttattgggccttattcagggggtgctagacga
ttgtatgttgggaatctacatttcaacatgacagaagaccagcttcggcaggtctttgaa
ccttttggccatgtggagttggtacaattgcctcatgatccagagacagggcatttcaaa
ggtttcgggtttgtacagtttgcacgtctcgaggatgcaagagctgctcaaagtttaaac
ggacagcttgacattgctggcagaactatcaaggtttcagctctctctgatcaagtcgga
atgcaagatgttggggcaaatgctgctgactttgatgatgatgacgacggcggtttgtcc
ctcaatgctcgttccagagccatgctgatgcagaaattggaccgtagcggtgctgcaaca
agtatcgctggttcacttggcacacccgctgtgactggccctgcagtaagcttaccatta
ccggcagctaatcttctcgggagtgctcccttggtttcccccctcatctctacacttgga
cagccttctgtggctggtcttagtctacctatagctgctgcgattgcatcacctgtcatt
tccattggagtgcctagtgaatgccttcttctgaagaacatgtttgatcctaaggcggag
acagaacctgattttgatgttgatatcaaagaagatgtccaagaggaatgctccaagttt
ggcacgttgaagcacatttttgttgacaagattagcgaggggcatgtgtatttgcgattt
gacagtgctactgctgccattggtgctcagcgtgctatgcatggaagatggtttgctggc
aagatgatcacagcaactttcatgctacctcaaaattatgaggcgaagttccccaacagc
aagtga
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