Amborella trichopoda: 18424677
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Entry
18424677 CDS
T02990
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
atr
Amborella trichopoda
Pathway
atr03440
Homologous recombination
atr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
18424677
03460 Fanconi anemia pathway
18424677
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
atr03032
]
18424677
03400 DNA repair and recombination proteins [BR:
atr03400
]
18424677
Enzymes [BR:
atr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
18424677
DNA replication proteins [BR:
atr03032
]
Eukaryotic type
DNA Topoisomerases
18424677
DNA repair and recombination proteins [BR:
atr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
18424677
FA (Fanconi anemia) pathway
18424677
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-CCHC
DUF7358
Motif
Other DBs
NCBI-GeneID:
18424677
NCBI-ProteinID:
XP_020517384
LinkDB
All DBs
Position
Unknown
AA seq
961 aa
AA seq
DB search
MDPSRSASLFTALSPSLATSVFTTLSLSLSLSLSHLRRLFSLFEVSEGPMREGIRVLNVA
EKPSVAKAVAGILSQGRLRVREGRSRYNKVYEFEHAIRGQRCHMLFTSVTGHLMEIVFHE
RYKKWHSCDPADLFSAPIQKHVPQDKLDIKRTLEEEARTCQWLVLWLDCDREGENIAFEV
VEVCTTANRNLDIWRAHFSALIDREIRHAVQNLGRPNQLFSDAVDARQEIDLRIGASFTR
FQTMLLKNAFVLNISDDDKNVIVSYGPCQFPTLGFVVERYWEIQAHEPEEFWTINCSHKT
DEGIATFNWTRGHLFDYSCALIIYEMCVEEPTATVKKVSHQERRKYPPHPLSTLELQKRA
SQYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSPNTDLQALVREQQGHPEWGSYAQRL
LSPEGLWRNPSSGGHDDKAHPPIHPTKFSAGESSWSPDHHRLYELVVRHFLACVSQPAIG
AGTTVEIDIAGEVFVASGLMIIEKNYLEVYRFESWGGSTIPTYAFGQQFIPTRLTLDSSV
TRPPPLLSESDLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDSNTRFSPTTLGEALVMG
YDCMGWDLWKPNLRSAMESDMKAVSEGRKTKSEVLASCLQQMKDCFLDVKSHKAKLFETM
GIFFERSNTPGGDNLHLAGGKVRSCQQCQESEMVLRRRPDGSFMVGCLRFPLCRNVVWLP
GAISEALVTEHVCNVCNPEPVFKIQFKFRRMEIPPNFDTEHLGCIGGCDETLRELIQICG
TGPRNLSSGSGTRGRQPTQFSGSAQRRNTSQVVCARCRQSGHSSNDCPQISRSQDAQRPG
HGNSNSGGADVLCESCQMPCTVRTANTENNRGRRFYKCDRQECNFFIWEDAIGSGNRGAS
RVNGNRSSVRGGQAGRGRGRRGARSGAATFVTATGEPVSDRRCFSCGDPSHFANVCPNRG
M
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atggatccctctcgctctgcaagtttgttcacggctctctctccctctctcgctacaagt
gtcttcactactctctctctctctctctctctttctctctctcatctgcgcagattgttc
tctttgtttgaagtttctgaagggcctatgagggaagggattagggttttgaatgttgca
gagaagccatcagtggcaaaggcagttgcaggcattctctctcaaggccggcttagagtg
agagaggggagatcgaggtacaataaggtgtatgagttcgagcatgcgataagggggcaa
cgatgtcacatgctgtttacctctgttacaggccatctcatggagattgtttttcatgag
agatacaagaaatggcattcctgtgaccctgctgacctcttctctgcccctattcaaaag
catgtaccccaggacaaactggacatcaagcgaactttggaagaagaggctaggacgtgc
cagtggcttgtactgtggctagactgcgatagagaaggggaaaacatcgcatttgaagtg
gtcgaagtttgcacaacagcaaaccgtaatcttgacatatggagggctcatttttcagct
ttaattgacagggaaattcgtcatgctgtgcaaaatctgggtcggcccaaccagctattt
tctgatgctgttgatgctaggcaggaaattgaccttcggattggtgcatccttcaccaga
ttccagactatgctattgaaaaatgcatttgtgcttaatatcagtgacgatgataagaat
gtcattgtcagttatggtccttgccagttcccaactcttggatttgttgttgaacgatat
tgggagatacaagctcatgagcctgaggaattttggacaatcaattgttctcataaaaca
gatgaagggatagctacattcaattggacgcgtggacacttgtttgattactcatgtgcc
ttgattatttatgagatgtgcgtggaagaacctacagcaacagtcaagaaagtcagtcat
caggagaggagaaagtatccgccacatcctttgagtacacttgagctccagaaacgtgca
tcacagtactttcggatgagttcggagcacactatgaaggttgcagaggatctctaccaa
gctgggttcatcagctaccctcgtacagagactgatagcttctcacccaacacagatttg
caggcacttgtgagagagcaacaaggacatcctgaatggggttcttatgcccaacgtctt
ttatctcctgaaggtctttggagaaatcctagtagtggggggcatgatgacaaagcacat
cctcctattcatccaacaaaattttctgcaggagaatcaagttggagtccagatcaccat
cggttgtacgagcttgtcgttcgccactttcttgcttgtgtctcccagcctgcgattggg
gctggaactactgttgaaatagatattgctggtgaagtttttgttgcatcaggcctcatg
attatagagaaaaattacttggaggtctatcggtttgagtcttggggaggatcaacgatt
ccaacttatgcttttgggcaacagtttattccaacaaggttgacacttgattctagtgta
actagacccccacctcttctaagtgagtctgatctgttgagctgtatggacaaggcaggt
atcggtactgatgcaacaatgcatgatcatataaaaaagcttcttgatcggttttatgca
attaaggattcaaacacacgtttctcaccaacaactttgggagaggcattggtgatgggt
tatgattgcatggggtgggatctttggaaaccaaacctgaggtcagctatggagagtgac
atgaaagctgttagtgagggcagaaagaccaaatctgaagtacttgcttcttgcttacag
cagatgaaagattgtttcttagatgtgaagtcacacaaggcaaaactgtttgaaacaatg
gggatcttctttgaaagatccaacacacccggcggagataacctgcatctggctggagga
aaagttcgctcttgccagcagtgccaggaatctgaaatggtgctcaggagaagacctgat
ggaagctttatggttggatgtttgcgcttcccactttgcaggaatgttgtgtggcttcct
ggagcaatatcagaagcactggtcactgaacatgtttgcaatgtgtgcaatccagaacct
gttttcaagattcagttcaagttccgcaggatggagataccccccaactttgatacagaa
cacttgggttgcattggtggttgcgacgagactctaagagaattgattcagatatgtgga
acaggacctcgcaatctttctagtggttcaggaacaagaggtagacagcccactcaattc
tcaggcagtgctcagagacgaaacacaagccaagtagtttgtgcgcgttgtaggcagtca
ggtcattcttccaatgattgtcctcagatttcacgctctcaagatgctcagagacccggc
cacggaaactcgaactctggaggagctgatgtcctatgtgaaagttgtcaaatgccatgc
actgtgcgtactgctaatacagaaaataatagggggagaagattttacaaatgtgacaga
caggaatgcaacttctttatatgggaagatgcaatcggaagcggcaatagaggagcttca
cgtgtgaatgggaacaggtctagtgtaagaggcggtcaggcaggcaggggtcgcggtaga
cggggtgcacggagtggggctgcaacctttgtaacagcaacaggtgagcctgtctctgat
aggaggtgcttttcatgtggtgatccatcgcactttgctaacgtgtgccccaatagaggg
atgtag
DBGET
integrated database retrieval system
