Amborella trichopoda: 18425230
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Entry
18425230 CDS
T02990
Name
(RefSeq) uncharacterized protein LOC18425230 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
atr
Amborella trichopoda
Pathway
atr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
18425230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atr03021
]
18425230
03019 Messenger RNA biogenesis [BR:
atr03019
]
18425230
Transcription machinery [BR:
atr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
18425230
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
18425230
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
18425230
NCBI-ProteinID:
XP_011629285
LinkDB
All DBs
Position
Unknown
AA seq
611 aa
AA seq
DB search
MIPLVNPQSSLPNQEMMPGSNVGNPQPAQFYSNQNSNLIPHSYSQPNHLAFTSLQPHIQN
LPMQHHIQFPANFNTQNPNFHNPLNNQNTNFQNRLTHNPSVMFPNRAQTLPSNHMPNAFV
NGIGYSVQFANPNGFHNHPQVNAYAANQIPQCPQNPINPGTTFTVNPSHPTFVPHPQNNP
STVGCPALGNFQPLTSSSNHVSSGSFEKSQLCMGIPYQNFHQLVLPNLGQSAIGVPGNVF
SQLNTSPQMQPMQKSLQPQGFLQPQEISYDHVGKHNAPIMNDGPKGKKFGNTPHHSDKGE
SRLRTPSLHGIGNSKAKFKHDTRNGKCFKGVVHGQHREGARNSNRNNWNREGIPESKRPS
LSAIYTEDEIKQWREERKKNFPTNANVEKKQAGKSRNNLVDAEAKLRRKRLKEILAKQAE
LGIEVAEVPPNYLSESEKQPPNRRHEKFNRNEKRNFRNKHKFQKRGKAGRREGKSHKSGN
KESPRSVLTRSPTLLQKLLSKEIKRDKSHLLQVFRFMVMNSFFKEWPDKSLKVPVCVVGE
SECEGKEVEREFSNEGLVSSGAVVEGDGDEDERYCSSGNEREGDAGLDHLGEDFVERKVT
EKEREEGEIFE
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgatccctttggtgaaccctcagtcttctcttcccaaccaggaaatgatgcccggctca
aatgttggtaatccccagcctgcacaattttacagtaatcaaaacagtaatctcatccct
cattcatattcccagcctaatcatttagctttcacaagcttgcaaccacatatacagaat
cttcccatgcaacatcacatccaatttccagcgaacttcaatactcaaaaccctaatttc
cataacccactcaataatcaaaacactaatttccaaaaccggcttacccataacccttca
gtgatgtttccaaatagagctcagacattaccttcgaatcacatgcctaatgcttttgtt
aatggcataggttactcggttcagtttgctaatccgaatgggtttcataaccacccacaa
gttaacgcttatgctgctaatcaaatcccacaatgtcctcaaaatcccattaatcctggg
actacgtttactgtaaatccttctcatcctacttttgtccctcatccacaaaacaatcct
tcaacagtgggttgccctgccttaggaaacttccaacctctaacaagctcttcaaaccat
gtcagcagtggttcttttgagaaatctcagctttgtatgggaataccgtatcaaaacttc
catcaattagtattgcctaatctgggtcaaagcgccataggagttccaggtaatgtgttc
tcacaactgaatacttcaccccaaatgcaaccaatgcagaagagtttgcaaccacaagga
tttcttcagccacaggaaatttcttacgatcatgtgggaaaacataatgctccaattatg
aatgacggtcctaaaggaaagaaatttggcaatactccacatcattctgataaaggtgaa
tcaagattaaggacgccttctctccatggcataggaaactctaaggcaaaattcaagcat
gatactagaaatgggaaatgctttaagggtgttgtgcatggccaacatagggaaggagca
cgaaattctaatcgtaataattggaatagagaaggtatccctgaatctaaaaggccatct
ctgtctgcaatttatacggaagacgagataaagcaatggcgggaagagcgtaagaagaac
ttccccacaaacgcaaatgtagaaaagaagcaggctggaaagtctcgtaataatcttgta
gatgcggaggcaaaattaaggcgtaagaggctaaaggaaatcctagccaagcaggctgaa
ttaggcatcgaggtagctgaagtacctccaaattatctttctgagtcagaaaaacaacct
cccaacaggagacatgagaaatttaacaggaacgaaaagaggaatttcaggaacaaacat
aagttccaaaagagaggtaaggctgggaggagagagggaaaatcacataagtctgggaat
aaagagtctccgagatcagttttgactcggagtccgacccttttacagaaactgttgagc
aaagagatcaagagagacaagagccatttgttgcaggtttttaggttcatggtgatgaat
tctttctttaaggagtggccagataaatccttgaaggtccctgtgtgcgtcgtgggagaa
tcagaatgtgaaggcaaagaggtagagagagaattctcaaatgaaggtttggtatccagt
ggtgctgttgttgagggtgatggggatgaggatgagagatactgtagcagtggaaatgag
agagaaggggatgcgggtttggaccatttaggtgaggattttgttgagaggaaggtcaca
gaaaaagagagagaggagggagaaatatttgagtag
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