Amborella trichopoda: 18425596
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Entry
18425596 CDS
T02990
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
atr
Amborella trichopoda
Pathway
atr03013
Nucleocytoplasmic transport
atr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
18425596
03015 mRNA surveillance pathway
18425596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18425596
03041 Spliceosome [BR:
atr03041
]
18425596
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
18425596
Spliceosome [BR:
atr03041
]
Complex C
Other components
EJC/TREX
18425596
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
18425596
NCBI-ProteinID:
XP_006830190
UniProt:
W1NNU8
LinkDB
All DBs
Position
Unknown
AA seq
426 aa
AA seq
DB search
MGSAAVEKTAEELRKEIEELNRQQWEITERLRDPRGLRRGLAANISNANATGIHTRRNHS
ALTNPPRRPRGVPERDRADAEGDDQPPPKRRLSSAVVKVKDGELVDDSKEKAINNEQADK
EDGAEDNFIDDKRLQKGPAGLRRDSGRTFRADVEALPVDQVPRVLPKDEDPNLVKRNKRM
FVQLLGTLEKFREEDMHLSSTKAYMRRSDSLRRAEQRAREESERLRQQEREQLAEKRRRD
LALRARVTAKAEEKKLELLFLHWSEHHKRLCNFLRTKSEPPIFYLPAKPLEGDPTLVDQR
KERSFQEWKDARRAELSEYQKHIEEQYLANVEAELERWQNANARSNTSRVNNAANLQETM
DKELESHRQAHGPKNTSRIPRGGEVDEDVEDDDDMLMMMDDVLQQPEADDDIKDAGNAVP
LEGGSN
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgggaagcgccgcagtggagaagacggcggaagagctccgcaaggagatcgaagaactc
aaccgccaacaatgggagatcacagaacgtctacgcgatccaagagggttgaggcgcggc
ttggcggccaacatttcgaatgcgaatgccactggcatacacacgcgccgcaatcattca
gcactgaccaatcctcctcgacgcccacgaggagttccagagagagatagagccgatgcc
gagggtgatgaccaacctcctcccaaaaggaggctctcttcagctgttgtgaaggtcaaa
gatggagaacttgtggatgattcgaaagagaaagcgatcaacaacgagcaagcagataag
gaagatggtgcagaggataatttcattgatgataagaggctgcagaagggccctgctgga
ttaaggcgtgatagtggcaggacctttagggcggatgttgaagctttgcctgtggatcag
gttcctagagtattgccgaaggatgaggatcccaacttggtaaaaagaaataaaaggatg
tttgtacagctgctgggaacattagagaaatttcgggaggaagacatgcatttgtcatca
acaaaggcatacatgcgcagatcagattcattgcgaagagctgagcaacgggctcgtgaa
gaaagtgagagattgcggcagcaagagcgcgaacaacttgcagaaaagcgaagacgagat
ctggcccttcgagcacgtgttactgcaaaggcagaagaaaagaagttggagttgctcttt
ctacactggagtgagcatcataaaaggctttgcaatttcctaaggaccaagtctgagcca
ccaatattttacttacctgctaaaccactagaaggtgatccaaccttggttgaccaaaga
aaagagcggtctttccaggaatggaaggatgctagacgagctgagttgtcagaatatcag
aagcatatagaggagcagtatcttgcaaacgtggaggcagagcttgagaggtggcagaat
gctaatgctaggagcaacacaagtagggtaaataatgcagcaaatttacaggaaacaatg
gacaaagagcttgagagtcacaggcaggcccacggccccaagaatacttcgaggatccca
aggggtggggaagttgatgaggatgttgaggatgatgatgacatgcttatgatgatggat
gatgtgctccaacagcctgaggctgatgatgacataaaggatgcaggtaatgctgttccc
cttgaaggtggcagcaattga
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