Amborella trichopoda: 18427086
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Entry
18427086 CDS
T02990
Name
(RefSeq) cleavage stimulation factor subunit 77 isoform X1
KO
K14408
cleavage stimulation factor subunit 3
Organism
atr
Amborella trichopoda
Pathway
atr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
18427086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18427086
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
18427086
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
TPR_19
HAT_Syf1_CNRKL1_C
TPR_15
TPR_CcmH_CycH
Iml2-TPR_39
TPR_9
TPR_16
PLU-1
MKT1_C
Motif
Other DBs
NCBI-GeneID:
18427086
NCBI-ProteinID:
XP_020518481
LinkDB
All DBs
Position
Unknown
AA seq
790 aa
AA seq
DB search
MVEGGRNTVESKEKKAKDCLLVDKYNVEASEILANEAQHLPISEAVPIYEQLLSTFPTAA
KFWKQYVEAVMAANNDDATKQIFSRCLLNCLQIALWRCYIRFIRKVNEKKGTEGQEETRK
AFDFMLNYVGSDIASGPVWMEYITFLKSLPATTAQEESQRMTAVRKAYQIAIITPTHHVE
QLWKDYENFENSVSRPLAKGLIFEYQPKYNSAKAVYRERKKYVDEIDWNMLAVPPSGSIK
EEQQCLAWKRLLAFEKGNPQRIDSTSSNRRVIFTYEQCLMYLYHYPDIWYDYATWHAKNE
PRDAAIKVFQRALKALPDSEVLRYAYAELEESRGDVQAAKKVYESLLANSVNATALAHIQ
FMRFLRRTESVDAARKYFLDARKSHNCTYHVFVAYALMAFCLDKDPKVAHSVFESGMKKF
MHEPGYILEYADFLCRLNDDRNVRALFERALSLLPLEESVEVWKRFTQFEQTYGDLASML
KVEQRRKEALSGTGEDGSSTLEFSLQDVVNRYSFMDLWPCSSKDLDYLTRQEWLAKNINK
KVERAALPNGASLADKNLSGPLTDSKTSTQFGKIIFPDVSRMVIYDPRQKPGPGYLPNAP
VPGLPTIPSFASPLVTNIGGVGTAKTLEEASKLLSPALVAFMAQLPNVEGPSPDVDLVLS
ILLQSNIPVVGKMAPPLMQNPPSGPNQSAANEVPSSNKPWAKFNGSVVRPGQPAKRKEPD
QPDEEDNNAMTQSRQLPVDVFRLRQRQRQQHQRGHRVGLASSSQQTGSLSGGSGAVSGGA
VSGEPSGSTE
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atggtagaaggaggaagaaatacagtggaatcaaaggaaaagaaagcaaaagactgtctc
cttgtggataaatacaatgtggaagcttctgaaattttggcaaatgaggctcagcatctt
cccatatcagaggcagttccaatatatgaacaacttctttcaacatttcccacagctgca
aagttttggaagcagtatgtggaggccgttatggctgcaaataatgatgatgcaacaaaa
cagatattcagccggtgtttgttgaattgccttcaaattgccctatggagatgttacatt
cgctttattcggaaagtcaatgaaaagaaaggaacagaaggtcaggaagagacaaggaaa
gcatttgatttcatgctaaactatgtcggaagtgatattgcatcagggcctgtatggatg
gagtacattacctttttgaagtccttaccggcaacaacagcgcaagaagaatcacaacgt
atgactgcagtgcggaaagcttatcaaatagccattattactcccactcatcatgttgaa
caactgtggaaggattacgagaattttgaaaattctgttagccggccattggcaaaaggt
ctgatatttgagtatcaaccaaagtacaacagtgccaaggctgtgtatagggagagaaag
aaatatgttgatgagattgactggaacatgctagctgttccaccatcaggttccatcaag
gaagaacaacagtgcttggcatggaaaagattgttagcttttgaaaagggaaatccacag
agaatagacagtacatcttctaatagaagagtcatattcacatatgagcagtgcctaatg
tacttgtatcattatcctgatatttggtacgactatgcaacatggcatgcaaagaatgaa
cctagagatgctgcaattaaagtgtttcagagggctttgaaggctctgcctgattcggaa
gttcttagatatgcctatgcggagctggaggaatcccggggggatgtgcaagcagcaaag
aaagtatatgagagtcttttggcaaatagtgtcaatgcaacagcattggcacacatacaa
ttcatgcggttcttacgaagaactgaaagtgttgatgctgcccgcaagtacttcttggat
gctcggaaatctcataactgtacttaccatgtatttgtggcttatgccttgatggcattt
tgccttgacaaggatccaaaggttgcccattctgtatttgaatcaggaatgaagaaattt
atgcatgagcctggatacattcttgagtatgcagatttcttgtgtcgcttaaatgatgat
agaaacgttcgcgctttgtttgaacgtgcattgagtttacttcccctggaggagtctgtt
gaggtttggaaacgatttacgcaatttgaacaaacatatggtgatttggcaagcatgttg
aaggtagaacaacgaaggaaggaagctctttctgggacaggcgaagatgggtcatcaacg
ttggaattttcattacaagatgttgtcaatcgttatagtttcatggatctttggccttgc
tcttctaaagatttagattatctaactcggcaagagtggcttgctaaaaacatcaacaag
aaagtcgaaagagctgcactacctaatggtgctagtcttgcagataagaatctttctgga
ccattgactgactcaaagacctctacccaatttggaaaaatcatctttccagatgtttca
agaatggtcatttatgatcctagacaaaaacctggtccaggatatcttccaaatgctcca
gtccctggactacccacaattccttcctttgcttcccctttagtgacaaatattggtggt
gttggaactgcaaagacacttgaagaggcttcgaaactcttgtcgcctgcattggtggct
tttatggcacagctgccaaatgttgaagggccatcacccgatgtggacttggtgttatct
atcttattgcaaagcaacatcccagtggttgggaaaatggcacctcctttgatgcaaaat
ccaccttctggccccaaccagagtgccgcaaatgaagtgcccagctctaacaagccttgg
gccaagtttaatggttctgtagtaaggccaggccaaccagcaaagaggaaagagccggat
cagcccgatgaagaggacaacaatgccatgacacaaagccgacaacttccggtggacgtg
tttcggttgcgccaacggcagcgacaacagcatcagaggggccaccgagttggcctggcc
tcttcctctcaacagactggttcgctgtcagggggcagtggtgcagtttctggtggtgca
gtttctggcgagccctcaggcagtaccgaataa
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