Amborella trichopoda: 18427207
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Entry
18427207 CDS
T02990
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
atr
Amborella trichopoda
Pathway
atr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
18427207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18427207
04121 Ubiquitin system [BR:
atr04121
]
18427207
03036 Chromosome and associated proteins [BR:
atr03036
]
18427207
03400 DNA repair and recombination proteins [BR:
atr03400
]
18427207
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
18427207
Ubiquitin system [BR:
atr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
18427207
Chromosome and associated proteins [BR:
atr03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
18427207
DNA repair and recombination proteins [BR:
atr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
18427207
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
zf-C3HC4_2
zf-HC5HC2H
BRCT_2
zf-C3HC4
zf-RING_2
zf-RING_6
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
zf-HC5HC2H_2
zf-rbx1
RTT107_BRCT_5
PHD_NSD
zf-RING_10
zf-Nse
Motif
Other DBs
NCBI-GeneID:
18427207
NCBI-ProteinID:
XP_006836324
UniProt:
W1NUC9
LinkDB
All DBs
Position
Unknown
AA seq
1069 aa
AA seq
DB search
MADLDHLDKMGRELKCPICLSLLNSAVSLTCNHVFCNLCISKYMKTGSNCPVCKVPYHRR
EIRPAPHMDNLVSIYKSMEVASGVKIFVTQTAQATKEEEKPNKSSFVSDAPKETHKSHGN
SKKQKRQSKRILQATDELPSEPSNPAKKRVQVSLYPPGSSETPILYKKISKCENKAANNE
VEGNSPILKGKKQLISNGSYENNGSIVPKEKPIFDEKGNPIFSPFFWLRDEDDEEKPVSQ
QTENALVLETPPHGKPSFSDLKDSDDDISDKKEEQDAISKAADMFDSEMFEWTQRACSPE
LCPTPSELQQPQNNGIQDKSDFYVTCNSDFAESANLDPGDEKLDLCLPDSLHQQPEKSNS
KLTTTKRTENCSSQLQKKHTRGSLKQPKNNETKDKAKDNAIHRAEDAKTPLFGHGGETLD
VGLLDSLNQQTEICNSRRTITKLKQNSGGKVGKFFTRGSKRMSKPQHDEIKDPSVDVQNL
IIEQGDKKLDAGRPDTLQQQAKIQNSKTTVTGRKRKSGSRAGKHSRVECTRVKKSQNNEV
NDEAEINETHPSKDAKDPIFEHGDEKVDAAFPTSLHQEICDSKITTKRNKPSSEVGNKSI
KGSKRLKTITEFFDVPSAGPMTNVAEKTVEMPKYSVSVLKPCLHRGISDDFKVNAEVHST
EDVIEIIHDRICCAFCQADSHSQVSGKILHHVNGKAVEADYKGMCSVIHAHKNCAEWAPN
VYFMEDIAMNLECEVLRGRKIKCSSCGIKGATLGCYEKSCRKSFHFPCAKSLPQCRWDEE
NFVMLCPAHSSSKLPKEISKAERNKRNNSSSKMDPQPPSINQSGNASKSVSKKQWRWSCA
SSSKWVLCGSALNNAEKEVVSKLANMAGVSVLKAWHPNITHVIASTDENGACRRTLKVLM
GIIEGKWIVKIDWIKACLMAMQPVNEDSYEISLDIHGIRDGPCNGRLRVSGKKPKLFNGY
EFYFCGDFLASYKKYLQEMVTASAGTVLQRKPILKKRENSIENVTQTKKTFIIYSLELPE
KSNSGQRALIMDRRRAEAHTIASGLGAQAIGHSWILDSIAACKLQNLHS
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atggcggatttggatcacttggataagatgggaagggagctaaaatgccccatttgcttg
agccttctaaactctgctgtttcgcttacatgtaatcatgtgttttgcaatttgtgtata
tcaaaatacatgaaaactggatcaaattgtcctgtctgtaaggtgccttatcatcgaaga
gaaattcgtcctgctcctcacatggataacttggtgagcatctacaaaagcatggaagta
gcttcgggggtcaaaatatttgtaacacaaactgcacaagcaactaaagaagaggagaaa
cccaataaatctagttttgtttctgatgctccaaaagaaacccataagtcccatggaaat
tcaaagaaacagaaaaggcaatctaagagaattttgcaagccactgatgaattaccttcc
gagccttcaaacccagcaaagaaaagagtacaggtctccttatatccaccaggaagttct
gaaactccaattctatacaagaaaatctccaaatgtgaaaataaagctgccaataatgaa
gtcgaaggaaactctcccatactcaaaggaaaaaaacaactgatatccaatggttcatat
gagaataatggttcaattgttcccaaagagaagcctatttttgatgagaaaggaaacccg
atattttcaccatttttttggttgagagacgaagatgatgaggaaaagccagtttctcag
caaacagagaatgctctggtcttggagaccccacctcatggaaagccttctttcagtgac
cttaaggattctgatgatgatatatctgataaaaaggaagaacaagatgctatttccaag
gctgcagacatgtttgatagtgagatgttcgaatggactcaaagggcctgctctcctgaa
ctatgtccaactccatctgaactgcagcaacctcagaacaatgggattcaagacaaatct
gacttttatgtgacctgcaactctgattttgctgaaagtgcaaatcttgatccaggagat
gaaaagttagatttgtgtttgcctgattctttgcatcaacaacctgaaaagagcaattca
aaattaacaaccaccaagagaactgaaaattgcagtagccaactacagaaaaaacataca
agggggtctttgaagcaacccaagaataacgagactaaagacaaggctaaagacaatgca
attcaccgtgctgaggatgccaaaaccccattatttgggcatgggggtgagacattggat
gtgggtttgcttgattctttgaaccaacaaactgaaatttgtaattcaagaagaacaatc
accaagttaaaacaaaactctggtggcaaagtagggaaattttttacaagaggttccaaa
agaatgagtaaacctcaacatgatgagattaaagacccttctgtggatgtccaaaacttg
atcattgagcaaggggataagaaattggatgctggtaggcctgatactttgcaacaacaa
gctaaaattcaaaattcaaaaacaacagtcactggaagaaaaagaaaatcaggtagcaga
gcagggaaacattctagggttgagtgcactagggtgaagaagtctcaaaataacgaggtt
aatgatgaggctgaaattaatgagacccacccttctaaggatgccaaagatccaatattt
gagcatggagatgagaaagtggatgcagcttttcctacttctttgcaccaggaaatttgc
gattcaaaaatcaccacaaagagaaataagcctagtagtgaagtagggaataaatctata
aaagggtccaaaagactgaagacaattacagagttttttgatgttccttctgctgggccc
atgacaaatgtagctgagaagacagttgaaatgccaaagtattcagtttcggtgttaaaa
ccatgccttcatcgggggattagcgatgatttcaaggtcaatgctgaagttcactccacc
gaggatgttattgagattattcatgaccgaatctgttgtgctttctgccaagctgatagc
cattcacaggtatctggcaagatattgcaccatgtcaatggcaaggctgtagaggcagat
tacaagggaatgtgtagtgtcatccatgctcataagaactgtgcagaatgggccccaaat
gtttactttatggaagatattgcaatgaacttagaatgtgaggttttgagagggagaaag
atcaaatgcagtagctgtgggatcaaaggggccactcttggatgctatgaaaagagttgt
cgcaaaagctttcactttccttgtgctaagtctcttccacagtgtcgatgggatgaggaa
aactttgtgatgctttgtccggctcactcttcatccaagcttcccaaagaaatatcaaag
gctgaaaggaacaaaagaaacaactcctcgtccaaaatggaccctcaacctccatcgatc
aatcagtctggtaatgcatcaaaatcagtgtccaagaagcaatggcgatggtcttgtgca
tcatctagcaagtgggttctttgtggatcagctctaaataatgcagagaaggaagtggtt
tcaaagttggcaaacatggctggagtttcagtgttgaaagcatggcatccaaacatcacc
catgtcattgcatcaacagatgaaaatggagcatgccgaagaacactgaaggtgctgatg
ggcattattgaagggaagtggatagtgaaaatagattggatcaaagcctgcttgatggct
atgcagcctgttaatgaggattcatatgaaataagcctcgatatccatggcatccgtgat
ggtccatgtaatggcaggcttcgagtttctggaaagaagcccaagttatttaatggctat
gagttctatttttgcggagactttttggcttcttacaagaagtacttgcaagagatggtt
actgcatcagcgggaactgtgttacagaggaaacccattctcaaaaagagagaaaactcc
atagaaaatgtcactcaaacaaagaaaactttcataatttacagtcttgagctccctgaa
aagtccaattctggccagagagctctaattatggatcgaaggagagctgaggctcacaca
attgcaagtggattaggtgcccaagctataggtcactcgtggattttggactccattgca
gcctgcaagttgcagaatcttcatagctag
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integrated database retrieval system
