Amborella trichopoda: 18427263
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Entry
18427263 CDS
T02990
Name
(RefSeq) vacuolar protein sorting-associated protein 53 A isoform X1
KO
K20299
vacuolar protein sorting-associated protein 53
Organism
atr
Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
atr04131
]
18427263
Membrane trafficking [BR:
atr04131
]
Protein recycling
Others
EARP complex
18427263
Endosome - Golgi transport
Tethering complex
GARP complex
18427263
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps53_N
VPS53_C
Vps54_N
COG7
COG4_N
RINT1_TIP1
DUF6331
Motif
Other DBs
NCBI-GeneID:
18427263
NCBI-ProteinID:
XP_006836379
UniProt:
W1NUH5
LinkDB
All DBs
Position
Unknown
AA seq
828 aa
AA seq
DB search
MDKSSALEYINQMFPTEASLSGVEPLMQKIRSEIRRVDGEILAAVRQQSNSGSKAKEDLA
AATHAVQELMYKIREIKAKAEQSETMVQEICCDIKKLDFAKKHITTTITALHRLTMLVSA
VEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKTIKQLLKSHIFSD
FSSLGTGRLKEDSNLMHQLSDACLVVDALEPSVREELVKNVCSRELTAYQQIFEGTELAK
LDKAERRYAWIKRQVRANEEIWKIFPNSWHVPYLLCIQFCKVTRTQLVEILDNLKEKPEV
GILLMALQRTLEFEEELAEKFSGGTGSQKREGGSNSEEIDVDKSESNSQNVSDIRKKYER
KLATQYGTGTEHEKESHNDLFVPGAGFNFRGIISSCFEPHLTVYVELEEKNLMENLEKLV
QEETWETEEGSQTNILSSSTQVFLIIRRSLKRCSQLTKSQTLFNLFKVFEKFLKAYAAKL
TARLPKGGTGIVAAATGTDGQIKTSDRDERVICYIVNTAEYCHKTSGELAENILKIIDSQ
YSDKVEMSEVQDEFSAVITKALMTLVHGLETKFEAEMAAMTRVPWGTLESVGDQSEYVNG
INSILTSSIPVLGSLLSPLYFQFFLDKLAASLAPRFYLNIYKCKHISETGAQQMLLDTHA
VKTILLEIPALGRQSSTAPGYAKFVSREMSKAEALLKVILSPVESVADTYRALLPEGTPL
EFQRILELKGLKKADQQAILDDFNKHGPGIAPTQQPPPQQLLPVAPVAAQTAQIVAQAVA
QPAAREDVLTRAAALGRGAATTGFKRFLALTEAAKDRKDGPFRKLFNA
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atggacaaatctagtgctttggagtacatcaaccaaatgttcccaacagaggcatcttta
tctggagtggaacctctaatgcaaaagatacgaagtgaaattcgcagggtggatggggaa
atattggcagctgttcgtcaacagagtaactctggaagcaaggccaaggaagatcttgca
gctgcaactcatgctgttcaggagcttatgtacaagatcagagaaatcaaggccaaggct
gagcaaagtgaaaccatggttcaagaaatttgttgtgacattaaaaagctggactttgca
aagaaacatataacgacaacgatcactgctcttcatcgcctcaccatgctagtttctgct
gttgagcaacttcaagtaatggcatcaaaacggcagtataaggaagcagcagcacaattg
gaggcagttaaccagttatgtagccactttgaggcgtacagggatattcctaaaataact
gagcttagagagaagttcaagaccatcaaacaattgctgaagtcacatatattttcagat
ttttcgagcttagggacagggagactgaaggaagacagtaatttaatgcatcaattatct
gatgcttgcttagttgttgatgctcttgaaccatcagtaagggaagagctggtgaaaaat
gtttgtagtagagaactcacggcatatcaacaaatttttgagggaacagaattagcaaag
ttagacaaagctgaaagaagatatgcttggataaagcgtcaggttcgtgcaaatgaagaa
atctggaagatatttcccaattcatggcatgttccctatttgctgtgtatccagttttgc
aaggtcacaaggacgcaacttgttgaaatccttgataatctaaaagaaaaaccagaagtt
ggcattttattgatggcattacagaggactcttgaatttgaggaggagttggctgagaaa
tttagtggaggaactggttctcaaaaaagagaaggtggaagcaattctgaagaaattgat
gttgataaaagtgaaagtaacagccaaaatgtttcagatataaggaagaagtatgagaga
aagctagctactcaatacgggactggaactgagcatgaaaaggagagccacaatgacttg
tttgtgcctggagcagggttcaacttccgtggtataatttcatcatgtttcgaaccgcac
ttgacagtttatgtagaattggaggagaaaaatttaatggagaatttggagaaacttgta
caggaagagacctgggagacggaggagggaagtcaaactaatattctttcaagcagcaca
caggtatttttgataattaggagaagtttgaagcgatgtagtcagttgacaaagagtcag
acattgttcaatctgttcaaggtgttcgaaaaatttctgaaggcttatgcagcaaaactt
actgccagattgccgaagggtggcactggcattgtggctgctgccactggcactgatgga
cagatcaagacatcggacagagacgagagagtaatttgctacattgtgaacacggctgaa
tattgccataaaacgtctggagagctagctgagaatattctaaagataattgattctcaa
tattcagacaaggtggaaatgtctgaagtgcaggatgagttctctgcagtgataaccaaa
gcattaatgacattagttcatggtttagaaacaaagttcgaagctgagatggctgctatg
acacgtgttccatggggtacacttgaaagtgttggtgaccaatcagagtatgtcaatggt
atcaattcaattttaacaagcagcattccagtccttggaagcctcctatctcccctttat
ttccaattcttcctagacaagctagccgcatccttggcccctcgtttttatctaaatatt
tataaatgtaagcacatatctgagactggggctcaacagatgctgctggatacccatgct
gtgaagaccattctcttggaaattcctgctttaggaagacagagctcaactgcccctggc
tatgccaaatttgtgagccgtgaaatgagcaaagcagaggcgctcttgaaggtcatcttg
tcacctgttgaatctgtggcagacacataccgtgccctgctgcctgagggtactcctttg
gagtttcaacgcattcttgaactcaaaggcctgaaaaaagcagaccagcaagcaatactt
gatgatttcaataagcatggccctggaattgcccctactcagcaacctcctccccaacaa
ctattgcccgttgctccagtagctgcccaaactgcccaaattgtcgcccaagctgtggcc
caaccagctgcccgtgaagacgtgctcacccgtgcggccgcccttggtcggggtgcagcc
accactggttttaagcgtttccttgccctaactgaagcagcgaaagacaggaaagatggg
ccttttcggaaactgtttaatgcttga
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