Amborella trichopoda: 18428042
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Entry
18428042 CDS
T02990
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
atr
Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atr03400
]
18428042
Enzymes [BR:
atr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
18428042
DNA repair and recombination proteins [BR:
atr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
18428042
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
AAA_22
DEXQc_Suv3
Helicase_PWI
AAA_19
T2SSE
Motif
Other DBs
NCBI-GeneID:
18428042
NCBI-ProteinID:
XP_020519141
LinkDB
All DBs
Position
Unknown
AA seq
1998 aa
AA seq
DB search
MLIQLPRLTTSLREPIDVDHAYLQRKFILQKLQSQRSNNSLSDSALARMIIPHWNEASID
LQQVYREFLGSVLELIDGEVTSEEVQMVAKTVYDIFCALGVDSGWSKTITSKKRELQALL
GHTASDASLQKAASLAHKVWSLQSIEHGDAPGKVDEVDESSCEFGINLVFKAPGRFLVGD
VSHDIEEGSFDENFGGYGILPEKPHDFDISVDGAGKGNASLRWLKDICDQIVKGGGSQLS
GDELAMAICRVLESDKPGDEIAGDLLDLVGDSSFDMIEELLSNRKKLVDAIRHGFLNLRT
EKVASTTQPRMPSYGTQVTIKMESERQIDKLRRKEEKRYKRGADRGVDNEFSTVLNFSSL
LLASEKKQPCDDLFGKGQDSSYATALPQGTVRNSYRGYEEVRIPPTSTSPMKPGEKLIEI
SELDDFSQAAFCGYKSLNRIQSWIFRTAYYTNENILVCAPTGAGKTNIAMITILHEIGQH
FKNGILLRDEFKVVYVAPMKALAAEVASTFSHRLAPLNLNVRELTGDMQLTKNELEQTQM
IVTTPEKWDVITRKSNDMSLSVLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESTQTM
IRIVGLSATLPNYLEVAQFLRVSEKGLFFFDSSYRPVPLAQQYIGITEKNFAARNDLLNE
ICYNKVVDSLKHGYQAMVFVHSRKDTGKTARNLIELARRNEDLELFQNDNHPQYSLIKRE
VHKSRNRELVEVFESGFGIHHAGMLRADRSLTERLFSDGLLKVLVCTATLAWGVNLPAHT
VVIKGTQLYDPKAGGWRELGMLDVMQIFGRAGRPQFDKCGEGIIITTHDKLAHYLRLLTN
QLPIESQFVNSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMKSNPLAYGIGWDEVLS
DPSLVSKQRNFVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYLQYSTVETYNDML
RRHMNESEVITMVAHSSEFENIVVREEEQNELENLAQICPLEVRGGPGDKYGKISILIQL
YISHGSLESFSLIADAAYISASLARIMRALFEICLRQGWCEMTSLMLEYSKAVDHQIWPH
QHPLRQFDKDLSPEILRKLEERGADLDRLVDMEEREIGALLRYGPAGKIIKQCLCFFPWI
QLSASVSPITRTVLKVDLLITPDFIWKDRFHGASQRWWILVEDSENDTFYHSELFTLTKK
MGKGGAQKLSFTVPIFEPHPPQYYIRAISDTWLHAETFHILSFQNLTLPDMKTTHTELLD
LKPLPISALGNRTYGGLYNFSHFNPIQTQTFHVLYHTDNNVLLGAPTGSGKTISAELAML
HLFNTQPDMKVIYIAPLKAIVRERMNDWRKRLVSVLGKKMVELTGDFTPDLMVLLSADVI
ISTPEKWDGISRNWHGRSYVMKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTDRSI
RFVGLSTALANAHDLANWLGVDDIGFFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKP
AYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDERARQFLSIPEDSLEMLLSQVT
DLNLRHTLQFGIGLHHAGLNDRDRSLVEELFVNNKIQVLVCTSTLAWGVNLPAHLVVIKG
TEYYDGRTKRYVDFPITDILQMMGRAGRPQYDQHGKAVVLVHEPKKSFYKKFLYEPFPVE
SSLREQLHDHINAEIVSGTVRNKEDAVHYLTWTYLFRRLVVNPTYYGLDDTESGTVNSYL
SKLVQNTLEDLEDSGCIKIDDNSVEPSMLGSIASQYYLSYMTVSMFRSNISRDTSLEVFL
HILSGASEYDELPVRHNEEHYNEDLSEKVPYLIDKYQLDDPHVKANLLFQAHFSRLQLPI
SDYTTDLKSLMDQSIRIIQAMIDICANSGWLSSAITCMHLLQMVMQTATLDSSKSTLFKG
LPNSKEWYQQQDSSSRSEIVTVRAHFKDTHSRRGLLGTKVGLTESWETEWRQRCKSSENQ
LNNAAEKSERRNRRNPVS
NT seq
5997 nt
NT seq
+upstream
nt +downstream
nt
atgttgattcagttacctcggttaacaacctcactgagggaacccattgatgtggatcat
gcctatctgcaacgcaagtttatccttcagaagctccaatcacagagatctaataattca
ttgtctgactcggcacttgcgcgcatgataattccccactggaatgaagcctcaattgat
ctacaacaggtgtatagagagtttcttgggtctgtgctagagttgatagacggcgaggtg
acatcagaggaagtccaaatggtagcaaaaactgtttatgacattttttgtgctttagga
gtggattcaggttggagtaaaacaatcactagcaagaaaagagagctgcaagcacttctg
ggacatacagcctctgatgctagcttgcagaaagctgcctccctagctcataaggtctgg
tctttgcagtcaatagaacatggggatgcacctggcaaagttgatgaagttgatgaatct
tcatgtgaatttggcatcaaccttgttttcaaagcaccaggccggtttttggtgggagat
gtttctcatgatattgaggaaggttcctttgatgaaaactttggaggttatggtatactg
ccagagaagccacatgattttgatatatctgttgatggtgctggcaaaggaaatgcaagt
ttaagatggctgaaagatatatgtgatcagatagtcaagggaggtggttcacagctttct
ggagatgaattagccatggccatttgtcgagtgctcgaatcagataaacctggtgatgag
attgccggtgacttgttagacctcgtcggagacagttcgtttgacatgatcgaagaactc
ttatctaatcgaaagaaattggtagatgctattcgtcatgggtttttaaatctgaggact
gagaaagtggcctcaactactcaaccacggatgcctagctacggaactcaggtcactatt
aaaatggaatctgaacgtcaaattgataagcttcgacgcaaggaagaaaagcgatataaa
cgaggagcagaccgtggggttgataatgaattttcaacagtattgaacttttcatctttg
ctccttgcaagtgaaaagaaacagccttgtgatgatctgtttgggaaaggtcaggattca
tcttatgctactgctcttcctcaaggaactgtgaggaattcctataggggatatgaagaa
gtcagaattcctccaacatcaacatcaccaatgaaacctggggagaaactgattgaaata
tcagagttagatgatttttctcaagctgctttttgtggttacaaaagtttaaaccgtata
caaagctggatctttcgcactgcatattacactaacgaaaatatcctggtctgtgcccca
actggtgctggcaagacaaatattgcaatgattactatcctgcatgagattgggcagcat
tttaagaatggtattctgctaagggatgaattcaaagttgtctatgttgctcctatgaag
gccttagcagctgaggtagcgtctacatttagtcatcgtttggcacccttgaatttgaat
gtcagagagcttacaggagatatgcagcttacaaagaatgaacttgagcaaacgcagatg
atagtgacaacacctgagaagtgggatgtgattacccgcaagagcaatgatatgtcgcta
tcagtgcttgtgaagctcttaataattgatgaagtgcatctgctaaatgatgatagaggt
cctgtaattgaagctttagttgcacggactcttcgccaggtggagtcaacacaaaccatg
atacggattgtgggtctctcggccacactgcctaattatttggaggtggcgcaatttttg
agggtgtctgagaaggggttattcttctttgattctagttaccgtcctgttccccttgct
cagcaatatattggcataactgagaagaactttgctgctcgtaatgatcttctgaatgaa
atctgctataataaggttgtagattcattgaagcatggatatcaggctatggtctttgtt
cactcgcgaaaagatacagggaaaacagcaaggaatctgattgagcttgctcgcagaaat
gaggatctagagttatttcagaatgacaaccatccacaatactccttaataaaaagagag
gttcataaatcaaggaaccgggaactcgtagaagtgtttgaatctggctttgggattcac
catgctggcatgttacgtgcggatagaagcttgactgagcgtcttttctctgatggcctc
cttaaagttttagtgtgcaccgcaactctggcatggggagtaaatctaccagctcacact
gtggtgataaagggcacacaactgtatgatccgaaggctgggggttggagagaattggga
atgcttgatgttatgcagatatttggacgtgctggtaggccgcaattcgacaaatgtggg
gaaggcattatcattacaactcatgacaaattggctcactacttacgactgcttaccaat
cagcttcctattgaaagccagtttgtgaattcattgaaagataacttgaacgctgaagtg
gctttgggtactgtaacaaatgtaaaggaagcttgtgcttggttgggatatacatatctt
ttcattaggatgaaatcaaatcctcttgcatatggaataggatgggatgaggtattaagc
gatccatcattggtctccaagcaaagaaattttgtaacagatgctgcccgtgcactcgat
aaagccaaaatgatgagatttgatgagaaaagtggaaacttctattgtacagagcttggg
cgcatagctagtcacttttaccttcaatattctactgttgaaacttataatgatatgcta
aggcgccatatgaatgagagtgaggtaatcaccatggtggcccattcatccgagttcgag
aatattgttgttagggaagaagagcaaaatgagttggaaaacttggcccaaatatgtcct
ttggaagttcgtggtggcccaggtgataaatatgggaagatttccattcttattcagtta
tacatatcacatggatcattggaaagcttttctttaattgctgatgctgcatacatcagt
gcgagcctggcgcgcatcatgcgtgctttgtttgaaatttgtttaagacaaggatggtgt
gaaatgacatctctcatgttggaatatagcaaggctgttgatcaccaaatttggcctcat
cagcatcctctacgtcaatttgacaaggatctttcacctgaaatattgagaaaacttgaa
gaaagaggagcggacctggaccgccttgttgacatggaggagagggaaattggtgctttg
cttcgttatggtccagctggaaagattatcaagcagtgtctctgtttttttccctggatt
cagttgtctgctagtgtgagcccaatcacaagaactgttctcaaggtcgatctgcttatt
accccggacttcatttggaaggatcgatttcatggtgcctctcagcgttggtggatcctt
gttgaggattctgagaatgacactttctatcattcagagctcttcactctaaccaagaag
atgggaaagggaggagctcaaaagctttcttttactgtaccaatttttgaaccacatcct
ccccagtattatatccgagccatttctgacacttggctgcatgcagagactttccacatt
ttgtctttccaaaaccttaccttgcctgatatgaagacaacacacactgaacttcttgat
ttgaaacctcttccaatatcagcactgggcaatagaacttatgggggtttatacaatttt
tcacacttcaaccccattcagacacagactttccatgtattataccacacggacaacaat
gttcttttaggcgctccaactggaagtgggaagactatttcagccgaacttgcaatgctc
catctcttcaatacccagcctgatatgaaggtgatctacattgctcccctgaaggcaatt
gtgcgagaaaggatgaatgattggcgaaagcggctagtgtctgtcttaggaaagaagatg
gttgagttgacaggggattttactccggatcttatggtgctactctcagcagatgtgata
atctccactcctgaaaaatgggatggaattagtcgtaactggcatgggcgaagttatgtt
atgaaggtgggcctcatgatacttgatgaaatccacttacttggagcagaccgggggcct
attcttgaggtaattgtttccaggatgagatacatatcctcacaaacggaccgcagcata
cgttttgtaggactttcaacggctttagcaaatgctcacgacttggccaactggttgggt
gttgacgacattggattctttaatttcaaacccagtgtgaggcctgtacctcttgaagtt
cacattcagggatacccggggaagttttactgccctcgaatgaacagcatgaacaaacct
gcatatgctgccatatgcacccattcacccacgaaaccagttcttatctttgtttcatct
cgccgccaaacaagactaacagctcttgacctcattcagtttgcagcttcagatgaacgt
gcgaggcaatttctcagtattcctgaagattccttggaaatgctactctctcaagtcact
gatctcaatctgaggcatacattgcagtttggcattggcttgcatcatgctgggttaaat
gacagagacaggtctttggtggaagaactgtttgtgaacaataaaattcaggtcctggtt
tgcacaagcacattggcatggggtgttaaccttcctgctcatctcgttgtaattaagggc
actgaatattatgatgggagaacaaaaagatatgttgatttccctattacagatattttg
caaatgatgggccgggctggtcgtccccaatatgaccaacatggaaaagcagtcgttctc
gttcatgaacccaagaaaagcttttacaaaaagtttttatatgagcccttcccagtcgaa
agtagtttgagagaacaattgcatgatcatatcaatgcagagattgtttcagggacagtt
cgtaataaagaggatgcagtgcattatctcacatggacttacctatttcggagattagtt
gtcaatcctacttactatggtttggacgatactgaaagtggaactgtgaactcatatttg
tctaagttggtccagaatacattggaagatttagaagacagtggctgcattaagatagat
gataacagtgttgagccttcgatgttggggtccattgcatctcagtattacctaagctat
atgacagtttcaatgtttagatctaacatcagccgagatacttcactggaggtttttctg
cacattctttctggtgcttctgagtacgatgagcttcctgtgagacataatgaggaacat
tacaatgaggatttatcagagaaggttccttatcttattgataagtaccagcttgatgat
ccacatgtgaaagcaaatttactctttcaggcacacttttcacggctacaattgccaatc
agtgactataccacagacttgaagtcactaatggatcaaagtatacgaattatccaagcc
atgattgacatttgtgccaatagtggatggctttcaagtgcaattacttgtatgcatctt
ctgcaaatggtcatgcagactgctaccttggattcgagcaagagcactctcttcaagggc
ttacctaattcaaaagaatggtatcagcagcaggattcttcttcaaggtcagaaattgta
accgttagagctcatttcaaggacactcactcaagacgaggattactgggcacaaaagtt
ggcctaactgaaagctgggaaaccgaatggcggcaacgttgcaaatcctcagagaaccaa
ttaaacaatgctgcagaaaaatcagagaggagaaatcggagaaaccccgtgtcctag
DBGET
integrated database retrieval system
