Amborella trichopoda: 18428364
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Entry
18428364 CDS
T02990
Name
(RefSeq) polypyrimidine tract-binding protein homolog 1
KO
K14948
polypyrimidine tract-binding protein 2
Organism
atr
Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atr03041
]
18428364
Spliceosome [BR:
atr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
18428364
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_8
RRM_5
MbeD_MobD
Motif
Other DBs
NCBI-GeneID:
18428364
NCBI-ProteinID:
XP_006837462
UniProt:
W1NYE2
LinkDB
All DBs
Position
Unknown
AA seq
523 aa
AA seq
DB search
MASVSGQPQFRYTQPPSKVLHLRNLPWECTVEELIELGKPFGKIVNTKCNVGANRNQAFV
EFADLNQAIAMISYYSSSSEPAQVRGKTVYLQYSNRQEIVNNKTTGDTPSNVLLVTIEGV
EAGDVSIDVLHLVFSAFGFVHKIATFEKTAGFQALVQFSDSETAAAAKNALDGRSIPRYL
LQEHVGPCTLRITFSAHTDLNVKFQSHRSRDYTNPYLPVAPSAIDATGQYTIGPDGKKRE
MESNVLLASIENMQYAVTADVLRAVFSAFGLVQKVAIFEKNAAIQALIQFPDVQTAVAAK
ENLEGHCIYEGGFCKLHLAYSRHTDLNVKVNNDRSRDYTTPDSVMLQNQPSILGQQPHPM
LAPTPSQISAGPFSPVVAHGIMGPRPVGGWEGCNAGVLATLPDQVLPNQVGSLPPQVQVI
PNQVASLPSQVQLMSNQVASLPGQVQMLPNQVAPLPGQVQLLSNQLFGLPGQVSNQVFGM
PGQVQVPPPQGYGAMAPNNGAGAFPLHEQGNQLPMTAMSPFGK
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgtctcgggtcagcctcaatttcgttacacacaaccgccttctaaggtgctg
catttgcgaaatttgccatgggaatgtacagtggaagagttgattgaacttggaaagccg
ttcggtaaaattgtcaacacaaaatgtaatgttggggctaatcggaaccaagcctttgtt
gaatttgcagatcttaatcaagctattgcaatgatctcgtattattcctcatcgtcagaa
cctgctcaggtacgagggaaaactgtctatcttcaatactccaacagacaagaaattgtc
aacaacaaaaccacgggggacactccgagcaatgtattgttagtaacaatagagggtgtt
gaagcaggggatgtcagcattgatgttctacacctggtattttcagcttttggttttgta
cataaaatagctacctttgagaagactgctggtttccaggcattggtgcagttctccgat
tcagaaactgcagctgctgcaaaaaatgcattggatgggagaagcattcccagatactta
cttcaggagcatgttggaccatgtaccctaagaataactttctctgcacatacggacctt
aatgtgaaatttcagagtcatcgaagcagggactacacaaatccttacctgcctgttgct
ccctcggccattgatgctactggtcagtataccataggacctgatggtaaaaaaagagag
atggaaagtaatgttcttcttgcatccattgagaacatgcaatatgcagttacagcggat
gtcttacgtgcggtgttttcagcctttggtcttgttcaaaaggttgctatttttgagaag
aatgcggctattcaagcattaatacagtttccggatgtccagactgctgtcgctgcaaaa
gaaaatctagaaggccactgcatatacgagggaggtttttgcaagcttcatctggcctat
tctcggcacacggacctcaatgtcaaggtaaacaatgatcgtagtcgggattacacaacc
ccagattctgtgatgctgcaaaaccaaccttcaattcttgggcagcagccacacccaatg
cttgcccctaccccttctcagatctctgcaggccccttctcgccagttgttgctcatggt
atcatgggtcctcgccctgtggggggttgggaaggctgtaatgcaggtgtattggctact
ttgcctgatcaagtgttgcccaatcaagtgggatccttgccccctcaagtgcaagtgata
ccaaatcaagtggcgtctttgccctctcaggtgcaattgatgtctaatcaggtggcttct
ttgcctggtcaagttcaaatgttgcccaatcaagtggctccattgcctggtcaggttcaa
cttctgtctaatcaattgtttgggttgcctggtcaagtttcaaatcaagtgtttgggatg
ccaggtcaagtgcaagtgcccccacctcaagggtacggggcaatggctcctaataatggg
gcaggtgcatttccattacatgagcaggggaaccagctgcctatgactgccatgtcgcct
ttcggaaaataa
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