Amborella trichopoda: 18428491
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Entry
18428491 CDS
T02990
Name
(RefSeq) uncharacterized protein LOC18428491 isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
atr
Amborella trichopoda
Pathway
atr04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
18428491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
atr04131
]
18428491
Membrane trafficking [BR:
atr04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
18428491
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
TPR_Vps41
VPS8_N
Clathrin
Beta-prop_EML_2
TPR_VPS8_2
ANAPC4_WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
zf-RING_2
WD40_Prp19
Beta-prop_EML
Motif
Other DBs
NCBI-GeneID:
18428491
NCBI-ProteinID:
XP_011621282
LinkDB
All DBs
Position
Unknown
AA seq
2016 aa
AA seq
DB search
MEVKPKAPMELDLDSFLQLQSSDEEEDDPIRGYNPTLDDILNDSDNSLSSSLSSSSLSGS
IKPVESQILNLQSHTLESLNSQSSAAETLNSQFSVIETPKSRLELDDPTISNSSLNHSLL
GSKLDCIRRRAASRESIGRSPSFDSNLSLLNRKNPNSSLPRLFGGIKPSPKPGAALAAAA
AASRTVPTPHATAIKFRKARGALQKMLIREDSNSSLNEYDETGSEHISENNQGDGFSSVG
SEQSASVSGEKVEDLDTKEVGIGGDSEVVDRKEVISFREEEFGVPSVVESIEADSVLNRK
VLNGDELEQNKSTNEENCFEVVQKDQVEEFEDLGLTVVESSVTVKQEFRVTENPTEIVEN
TINKTAETNDSGESSINAAVRTKDLEMGGSLSDETEETKLVEETVDVNQRKLLSENEVAE
DRSIHHESKRSGKRAGKKLRSAMKPLDLAEEMEKKNAFSGLHWEEGAAAQPMRLEGIRRG
PPAVGYLQIDPDNAISHAILSYGFRRDHGSPQALAVHMNYIAVGMSKGVVLVMPSRYSAH
SSDNMDSKVFMLGSPGEKSHPPITAMCFNLQGDLLLVGYGNANITVWDVQKGASVKVLTG
EHTAPIVHLFFQGQDSQVTRQFRVISGDCKGLVLLHTFAVVPLLNRFSVKTQCLFDGQKT
GTVLSASPLLFEDIQVGRMASIQGGSMVSSSGLGSMVGGVVGGVVGGDSGWKLFNDGSSI
EEEGVVIFVNHHTALVVKLGPSSVEAYERLSRPDGVREGSLPYTAWKCATNLRDVSTEGL
DRASLIAIAWDRKVQVATLRKAELKINNEWSLDSAAIGVSWLDDRMLVVLTLKGQLCLFT
KEGNEIHRTSFIQGASGGDDVIVYHTLFTNSFGNPEKAYHNSIAVRGASIYILGPSHLLI
SRLLPWKERIQVLRRAGDWMGALDMALRLYDGHAHGVIDLPRTLDSIRVTIMPYLIELVT
GYVDEVFSYISVAFHNRIDKQDQNGQDGSRSFHLEIKEQFARVGGVAVEFCVHISRIDIL
FDEIFSKFVAVQQGGTFLELLEPYILKDMLGCLPPEIMQALVEHYSSKGWLQRVEQCVLH
MDISSLDFNQVVRLCREHGLYSALIYLFNRGLDDFKAPLEELLVVAQDSQNVNAVAIGYR
MLVYLKYCFLGLAFPPGRGSIIPSRLLSLKKEMMQFLLQSSNTSEIVTNSTVTSGPCLNI
CYFLWLDTEATLEVLKFAFQEEENLKGGDYLNDLVNTDIKASMISGSENVEGENSLVQNT
LNTLVQVLDMELTGVVRSSGSDDGSLKVWPSKKDVGLLLEFIACFVACHHAVVPKSLLNR
ILEYLTCDNDVSPWDSDSKPEIARRREKMVLALLKVVAETEWDSLYVLELCEKAQFYQVC
SLIHIKRAHYVAALDSYMKEIDEPIHAFAFISNTLLQMRDNDSSDFRQAVVTRIPELVKL
SREGAFFFIIEHFSKESDQILFQLRSHPRSLFLYLKTVIDVHLSGSLNVSALRKGHVLDP
PLGLKTVSDHSKDIEAYLERVSNLPKMLRQNSVQVTDEMAELYLELLCQYEPHSVLKFLE
TFENYRVEHCLRLCQEHGVIDAAAFLLERVGDVGSALSLALSGIDEKISMIHIAVGNKVA
EAGSTKFTELEWLNIVLEMKEVNVVHDVLLAAVGLCQRNTLRLDFQESETLWFLLLDIFS
EPLRYLSDHRTVRISRAISDTPAASLGVQAGDRSYRWHDAEFDKVANVYRRLLSRFIGEI
VEGMVGYVPLLTIMAKLLSDNGFQEFGDFKVTIMGMLATYGYERRILDAAKALIEDDTFY
SMSLLKKGASHAYTPLSTNCCICNCSLTKDSAVMAIRVFHCGHVAHVHCDIQETNTLSKD
SSVGCPVCMPNVKPSSVRGKGTLMENGFVSTSYAEPQHSQGMILQPLHESDVIEKPYGLQ
HMSRFEILGNLQNTLKSLKIDPLPQLRLSPPAIYHDKVKKNTGNSKGGSTSSSRKGEKSN
KNQRAGELTIRGTSSFQFPLKSNIFSSEKRKKRTVT
NT seq
6051 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgaaacccaaagctccaatggagcttgaccttgactcattccttcaattgcag
agcagtgatgaagaggaagatgatccaatccgtggctataatcccactttagatgacatt
ctcaatgattcagacaattccttgtcttcgtctttgtcttcctcctccctatctggttcc
atcaaaccagttgaatcacaaattctaaatttgcaatcccacacactagaatcgcttaat
tcacagtcctcagctgctgaaaccctaaattcgcagttctctgtgatcgaaaccccaaaa
tctagattagaattggatgacccaaccatttctaatagttctctcaaccattcgttatta
ggatcgaagctcgattgtatcaggagaagagcagcttctcgagaatcaattggtaggtca
ccttcatttgattccaatttatctctattgaaccgtaaaaaccccaattcttctctgcct
aggctttttggggggataaaacctagccctaagcctggcgctgccttagcagccgctgca
gcagcttcacgcacagtaccaactcctcatgcaactgcaataaagttcagaaaagctcga
ggagcacttcagaagatgctcattcgagaagattcgaatagttcattgaatgaatatgat
gaaactggttcagaacacatttctgagaataatcagggggatgggttcagcagtgtggga
tctgagcagagtgcttcagtctctggtgaaaaagtcgaagatttagatactaaagaagtg
ggaattggtggtgatagtgaagtagttgataggaaagaagtgataagtttcagagaggag
gaatttggagttccttcagttgttgaatccatagaggcagactcagttttgaataggaag
gttttaaatggggatgaacttgagcagaacaaaagcacaaatgaggagaactgttttgaa
gtggtgcaaaaggatcaagtggaggaatttgaagacttgggattgactgtagtggaatct
agtgttactgttaagcaggagtttcgtgttactgaaaatccgaccgagattgtagagaat
acaattaacaaaactgcggaaacaaatgattccggggagagctctatcaatgcagctgtg
cgaacaaaggatttggagatgggtggttctctcagtgatgaaactgaggaaacaaagctt
gttgaagaaactgttgatgttaaccaaaggaaactgctctctgaaaatgaggttgctgag
gacagatcaattcatcatgagagcaagaggtctggtaaaagagcagggaagaagctacgg
tcagctatgaagccacttgatttggctgaagagatggagaagaaaaatgcgttctcaggg
ttgcactgggaagagggtgctgcagctcaacccatgaggctcgagggcataaggaggggt
cccccagctgttgggtatttgcagattgatcctgacaatgcaatttctcatgccattttg
tcttatgggtttaggcgtgatcatggttcgcctcaggcattggctgtccatatgaattat
attgctgttggaatgtcgaagggggttgtgcttgtcatgccaagtagatattctgctcat
agttctgacaacatggattctaaggtgtttatgctggggtctcctggtgaaaagtctcat
cctcctataacggccatgtgcttcaatcttcaaggggatttgcttttagttggttatgga
aatgccaatataacagtttgggatgttcagaaaggagcatctgtgaaagtattgactggg
gaacatacagctccaatagttcatttattcttccaggggcaggattcacaagttacacgg
caatttagagtaatcagtggtgattgcaaaggcttagttctgctgcatacttttgcagtt
gttcctttattgaataggttctcagttaaaactcagtgtcttttcgatgggcaaaaaaca
ggcacagttctatctgcttctccgcttctgtttgaagatattcaagttggtcgtatggca
tccatccagggtggcagtatggtttcttcgagcgggcttggtagcatggtgggaggtgtt
gttggtggtgtagtcggaggtgattcaggatggaagcttttcaatgatggatcttcaatt
gaagaggaaggagttgtgatatttgtcaaccatcacactgctcttgtggtaaagcttggt
ccttcatctgtggaggcctatgaaaggctttcaaggcctgatggggtacgggaaggttct
ttgccttatacagcatggaaatgtgcaactaatttacgagatgtgtctactgaggggtta
gatagggcttcattgattgcaattgcgtgggaccgaaaagtccaagtagcaacattgaga
aaagcagagctgaaaataaacaatgagtggagccttgatagtgcagcaataggcgtctca
tggttggatgataggatgctggtggttctaaccttgaaaggacaactatgtttgtttaca
aaggaaggaaatgagattcatcgaacaagtttcattcaaggtgcttctggaggggatgat
gtcattgtctatcatactctcttcacaaattcattcggtaaccctgagaaggcttatcat
aattccattgctgtaagaggggcaagtatttatattctagggccctcacacctattaatt
tctcggcttcttccatggaaagagcgtattcaagtgctgcgaagggcaggtgactggatg
ggggcattggacatggcactgagactgtatgatggtcatgctcatggcgttattgatctt
ccaagaactctagattctatcagagttaccataatgccttacctgatagagttggtcaca
ggctatgttgatgaagtgttctcatacatatcagtggcattccacaaccgaattgacaaa
caggatcaaaatggacaggatggaagcaggtcttttcacctggagatcaaagaacaattt
gctcgtgttggtggtgttgcagtagaattctgtgttcatataagcaggattgacatttta
tttgatgaaattttctccaaatttgtggctgtccaacagggaggtacttttttggaactt
ttggagccatatatattgaaagatatgcttggatgtctacctcccgagattatgcaagca
ctcgtagagcactacagcagcaaagggtggttgcaaagggtagagcagtgcgttcttcat
atggacatttcctccctggactttaaccaggtggtcaggctttgccgggagcatggtttg
tacagtgccttgatatatcttttcaatagaggtttggatgatttcaaggcacctttagag
gaacttttggtggttgctcaagatagccaaaatgtgaatgcagttgccatcgggtatcgg
atgcttgtttacttgaaatactgcttcttgggtcttgcattccctccaggacgtggcagc
attattccatcccgcttgctctctctgaaaaaggaaatgatgcagtttctactacaaagt
tcaaatacatctgaaatagtgacaaattcaacagttaccagtggaccatgtctaaacatc
tgctactttttgtggcttgatacggaggcaactttagaggttctgaagtttgctttccag
gaagaagaaaatcttaaaggtggtgattatttgaatgatttggtcaacacggacattaag
gcaagcatgataagtggttcagagaatgtggaaggtgaaaactcattggtgcagaacact
ttgaatactttggtgcaagttcttgatatggaactcacaggggtagttagatcctctggc
tcagatgatggatcactaaaagtttggccatctaaaaaggatgttggcctgctgctagaa
tttattgcttgctttgttgcatgccatcatgctgttgttcccaaaagtttattgaatcgt
attttggagtatttgacatgtgacaatgatgtatcaccatgggattctgattcaaaacca
gaaattgctcgtagaagagaaaaaatggtacttgcactgttgaaagtggtggctgaaaca
gaatgggactcattgtatgtattggagctttgtgagaaggcacagttctaccaggtttgt
agcttgatacacattaagagagctcactatgttgccgcccttgatagttacatgaaagaa
atagatgaacctatccatgcgtttgcctttataagcaacacactgctacaaatgagagat
aatgattcttctgacttccgacaggcagttgttactcgaattccagagttggtaaaactg
agcagagagggagcatttttttttatcatcgaacatttcagtaaagaaagtgatcaaatc
ctctttcagcttcgctcccatcctaggagtctttttctttatctcaagacagtcattgat
gtccacttgtctggctctctcaatgtttcagcattgcgaaaagggcatgttctagatccc
ccacttggtttgaaaacagtctcggatcattccaaggatattgaagcatacttggaaagg
gtctctaatctaccaaagatgctgaggcaaaattccgttcaagtaactgatgaaatggca
gagctctatcttgagctcttgtgccaatacgagcctcattcagttctcaagttcttggaa
acttttgaaaactatagggtggagcactgtttgcgtttgtgccaggagcatggtgtcata
gatgccgctgcattcttgcttgaaagagttggagacgttgggagtgctttatcacttgct
ttgtctggtatagatgaaaaaataagcatgattcatattgctgtgggaaataaagtagct
gaggcgggttctactaagttcacagagttggagtggctcaatattgttttagaaatgaaa
gaggttaatgtcgtacatgatgtactccttgctgctgttggtttatgtcagcggaacacc
ttgcgtttagattttcaagagtctgagacactctggttcttattacttgacatcttttct
gagccgctgagatacttgtctgatcacagaacagttcgtattagtcgagcaatttctgat
acacctgctgcctcattgggagttcaagcaggagacaggtcatatagatggcatgatgca
gaatttgataaagttgctaatgtctatcgaagattgctttctcgattcattggagaaatt
gttgagggaatggtgggttatgtacctcttctaactatcatggctaagctgctctctgat
aatgggttccaagagtttggtgatttcaaagttaccataatggggatgctggctacgtat
ggctatgaacggagaatcttggatgctgccaaagctttgatcgaggatgatacattttat
agtatgagcttgctcaagaagggagcttctcatgcttatacccctctgagtacaaactgc
tgtatctgtaattgctccctgaccaaggattcagcagtcatggccatccgtgtcttccat
tgtggtcatgtggcacatgtccattgtgatattcaagaaactaacacattaagtaaagat
tcttcagttgggtgtcctgtttgtatgccaaatgtaaagccttcatctgtgagaggcaag
ggcacccttatggagaatggatttgtgagtacgtcttatgctgagccccaacattcacaa
gggatgattcttcaacctctgcatgaatctgatgtcattgagaagccctacggacttcag
catatgtctcggtttgagatcttggggaatcttcagaataccctgaaatctctgaaaatt
gacccactgcctcaattaaggctctcacccccagcaatttaccatgacaaggtgaaaaaa
aatacaggaaattcaaaaggtggaagcactagcagctcacggaaaggcgagaaatcaaat
aaaaaccagcgagctggagagctgacaattaggggaacttcatcgtttcagtttccttta
aaatccaatatcttcagtagtgagaagagaaagaaaaggacagtaacatag
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integrated database retrieval system
