Amborella trichopoda: 18428495
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Entry
18428495 CDS
T02990
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL3
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
atr
Amborella trichopoda
Pathway
atr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
18428495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
atr04121
]
18428495
Enzymes [BR:
atr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
18428495
Ubiquitin system [BR:
atr04121
]
Ubiquitin ligases (E3)
HECT type E3
18428495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
TPR_TRIP12_N
ARM_ARMC5
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
18428495
NCBI-ProteinID:
XP_011621274
LinkDB
All DBs
Position
Unknown
AA seq
1887 aa
AA seq
DB search
METRSRKRAEASSSALSHSTRSSKKPRLSSSCTTTPSPRTRPLNSRTTPLNSRTTPPTTD
KMDDSSSASTSRKLRNSQKQEKDSSDKGKEKEPETNRHHTSNLSTDGVAGDDDHESSEGV
SILHQNLTSASSALQGLLRKLGAGLDDLLPSSTGGAISSQQSGRLKKLLSGLRADGEEGR
QVEALTQLCELLSIGTEDSLGAFSVDSFVPVLVGLLNHECNPDIMLLAARALTHLCDVLP
SSCAAVVHYGAVPCFCARLLTIEYMDLAEQSLQALEKISHEHPTACLRAGALMAVLSYLD
FFSTGVQRVALSTAANICKKLPSDAADFVMEAVPLLTSRLHDHDSKVLDHASVCLTRIAE
SFASSPEKLDELCNHGLVAQAAGLISLSASGGGQASLSTSTYTGLIRLLSTCASGSPLAA
KTLLLLGISGILKDILSGSGLVASISVSPALTRPPEQILEIVNLANELLPPLPQGTISLP
TCSNTPGRGSVGKRSSSSGKQEDANGAVSEVSSREMLLRDQPELLQQFGMDLLPILVQIY
GSSVNGQVRHKCLSVISKLMYFSTPNMIQSLLGETNISSFLAGVLAWKDPQVLVPTLQIA
EILMEKLPDTFSKMFVREGVVHAVDVLISSSSSSPAPAQASSAEKESEILHGTSLRSRRY
RRRSGGSTPDPNSVEESKVSSMGNMGSPPTSVEMASGTSGLRAAVSAYARSFKDRYFPSD
PGAAEVGVTDDLLKLKELCTKLNAGVVDLKGKGKGKSKASGPALAEITANAEVQLIATVS
EIFAELCKEDGVSTFEFIGCGVVAALLNYLSCGTFSKENTNTSEANLLKLRSQALVRFKL
FIAIALPAGVAGDNQSPMSILVQKLQNALSSLERFPVILCHASRSSGGSMRLSSGLSALS
QPFKLRLCRSQGDKSLRDYSSNVVLIDPLASLSAVEEFLWPRVQRSESAQKPTVSLGNSE
AGLTPNVTGASSLSVSAPAAPGRHNSSRSRSSATAGTVAKKDNPDGNASSSSKGKGKAVL
KSVPDVETRGPQTRNATRRRAASDRDSQMKLANNDSSSEDDDLDVSPVEIDDALVIEEDV
SDDEDDDHEEVLRDDTLPVCLPEKVHDVKLGDSPDDGTVASATSESHSNPSSASNNRAPV
KGVESAEFRSGSSFVSRGGMSFAAAAMAGLASASGKGIRGSRDRRALPTTSSPSDPPKLI
FSSGGKQLSRHLTIYQAIQRQLVLDEDDDERCTGSEFLSTDGHRLWNDVYTITYQRADAQ
AERTSARTSASTSLSRSSKASAASISGSNTSWQQISLLDSILQGELPCDMEKLGPTYSIL
LLLRVLEGLNQLAPRLRVQAVSDAFSKGKLSTLDELNMVSVRVPPEEFINSKLTPKLARQ
IQDALALCSGGLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALHRLQQQQSAENLS
STSEREVRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEF
YTLLSHDLQKICLEMWRSSSSPEKSVMEIDGQDQTVENMDDVTATKKLVLDPVGGELVQA
PLGLFPRPWPPNADTSEGSKFSKVVEYFRLVGRVMAKALQDGRLLDLPLSPAFFKLVLGY
ELDLHDILSFDADFGKILQEMQVLVHKKEYLESMPGDHRELISDLRFRGAPIEDLCLDFT
LPGYSDYILKEGAESTMVDIHNLDEYITLVVDATVRTGIMRQMEAFRAGFNQVFDITSLQ
IFTPTELDYLLCGRRELWEPETLADHIKFDHGYTAKSPAITNLLEIMGEFTPEQQRAFCQ
FVTGAPRLPPGGLAVLNPKLTIVRKHSSSSTNISSNGTGVTESADEDLPSVMTCANYLKL
PPYSTKEIMLKKLLYAVSEGQGSFDLS
NT seq
5664 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgcggagccgcaagcgggcggaggcctcctcatcagccctttctcactccact
cgttcctctaagaaaccccgcctctcatcctcctgcacaaccaccccttctccacgcaca
cgccctctcaattcacgcaccacccctctcaattcacgcaccacccctcctactactgat
aaaatggacgactcctcctcagcctctacctcgcgcaagctccgcaattcccaaaagcaa
gaaaaagactcttcagacaaaggaaaggagaaagagccggaaacaaacagacaccacact
agtaatctgagcaccgatggagtcgcaggggatgacgatcacgagagcagcgagggtgtc
agcattttgcatcagaacctgacatcggcaagcagcgccctacaggggctcttgcgtaaa
ttgggggcggggctggatgatctgctgccatcgtcgactgggggggcgatctcctcgcag
cagagtgggaggttgaagaagctactctcaggcctgagggcggatggcgaggagggaagg
caggtcgaggcattgacacagctctgtgagcttctgtccattgggactgaggattcattg
ggggcattctcggtggattcatttgtcccggtgcttgtcggcttactcaatcatgaatgc
aaccctgatattatgctgctggcggcacgagcccttacccatctctgtgatgtgttgcca
tcatcatgtgctgcggtggtgcactacggggcagtgccatgcttctgtgcacggcttctc
accattgagtacatggacttggctgagcagtctttgcaagccctagaaaagatttctcat
gaacacccgacggcttgtttgcgtgcgggagcattgatggctgtgctgtcctatctcgac
ttcttctctactggagtccaaagggttgcattatccactgctgcgaacatttgtaagaaa
ttgccatccgatgcagctgactttgtgatggaggctgtgcccctacttaccagtcggctg
catgatcatgattcaaaggtactggaccatgcttctgtttgcttgacccgcattgcagaa
tcatttgcatcatctcctgagaagttggatgaattgtgtaatcatggtttggttgcgcaa
gctgctggacttatttctctcagtgcttcaggtggtggccaagcgtcactcagcacatct
acatacacgggtctgataaggctactctcaacatgtgcaagtggctcacctttagcagct
aaaactctcctcctccttggcattagtggcattctcaaggatattctttctggttctggt
ctagttgccagcatttctgtttcacctgctctaacgaggcccccggagcagattcttgag
attgtgaatcttgcaaatgagcttcttcctccactcccacaaggtacaatttccctccca
acctgctctaatacccctggaagaggatcagttggaaaacgctcaagcagttctggaaag
caagaagatgctaatggagctgtttctgaggtttcttcccgggaaatgttattgcgtgac
caaccagagcttcttcagcagtttgggatggatctcctccctattcttgtacagatctat
gggtccagtgtcaatgggcaagttcgccacaaatgtctctctgttatcagcaagttgatg
tattttagcaccccgaatatgattcaatctttacttggggaaactaacatatcaagtttc
ctagctggagttctagcttggaaagacccacaagtgttggttcctacccttcagattgcg
gaaattctcatggaaaagcttccggatactttctctaagatgtttgtgagggaaggcgtt
gttcatgctgtagatgtccttatatcctctagctcttctagtcctgctcctgctcaagca
tcttctgccgagaaagaaagtgaaattttgcatggaacatctttgcgttctcgacgttat
cggcgtcgtagtggaggttcaacccctgatcccaattctgtggaagaatcaaaagtttct
tctatgggaaatatgggttcacctccaacttcagtagagatggcctctggtacttctggt
ttacgtgcagctgttagtgcttatgctcgaagctttaaagataggtactttccttccgat
cctggagctgccgaagttggagtaacagatgatcttttaaaactgaaagaactatgcacg
aagctgaatgccggtgttgtggatctcaagggaaaaggcaaagggaagtctaaggcatcc
gggcctgccttggctgaaataactgctaatgctgaagttcagttgatagctactgtatct
gagatttttgctgaattatgcaaagaggatggggtgtccacatttgagttcattggatgt
ggagttgttgcagcattactgaattatctatcctgtggaaccttttccaaggagaataca
aatacctcagaagccaatttgctcaagcttcgttcacaggcgcttgtgagatttaagctg
tttattgcaattgcccttcctgctggtgtggctggtgataatcaatctcctatgtcaatc
ttagttcagaaactgcaaaatgctttgtcttccttggagaggtttccagtcatactatgt
catgcatcgaggtcttctggaggaagtatgcgcctctcttcagggttaagtgcattgtct
cagccctttaagttgcgtctgtgtagatcacaaggtgataaatctcttcgggattattca
tcaaatgttgtgctcattgaccctctggccagtttatcagctgttgaagaattcttgtgg
cctagagttcaaagaagtgagtcagcgcagaagcctactgtgtctttagggaactctgaa
gctggtttgacccccaatgttactggtgcttcctccttgtcagtgtcagctcctgctgcc
cctggtcgacacaattcaagcaggtctaggtcatctgcaacagcaggaactgttgctaaa
aaggataaccctgatgggaatgcaagctcgtcttccaaaggaaagggtaaagctgttttg
aaatctgtcccggatgttgaaacaagaggaccacaaaccagaaatgcaacacggaggaga
gcagcttctgatagagactcacagatgaaactggcaaataatgattctagctcagaggat
gatgacttggatgtttctcctgttgagattgatgatgctttagtgatcgaggaggatgtt
tctgatgatgaagatgatgatcatgaagaggtgctcagagatgacacacttcctgtttgc
ctaccagaaaaggtgcatgatgtgaaacttggggattcacctgatgatggaacagttgct
tctgcaacaagcgaaagccattcaaatccgtcgtctgcttcaaataatagagctccagtt
aagggtgtggagtctgctgagttcaggagtgggagctcatttgtttcaagaggggggatg
tcctttgctgctgctgcaatggctgggcttgcatctgcaagcggtaaaggcattaggggt
agcagagatcgtcgtgcattaccaacaacaagtagtccaagtgaccctccaaaattaatt
ttttcaagtggtggaaagcaacttagccggcatctaacaatctatcaagctattcaacgc
caacttgtgctagatgaggatgatgatgaaaggtgtactggctctgagtttttgtctact
gatggacacagattatggaatgatgtgtataccatcacataccagagggccgatgcccaa
gctgagaggacttctgctaggacttcggcttctacttctctgtcaaggtcttctaaagct
agtgctgcttccatttctggctctaacacttcttggcaacaaatatcacttctggatagc
attttgcaaggggagcttccatgtgatatggagaaattgggtcccacttacagcattctt
ttgttgctgcgtgttttggagggtttgaatcagttggctcctcgcttgagagtccaagca
gtctctgatgctttttcaaaggggaaattatctaccttggatgagctaaacatggtgagc
gtcagagttccaccagaagaatttattaacagcaagctgaccccaaaactcgctcgacaa
atccaggatgctcttgctctgtgtagtggtggccttccttcttggtgttaccaattgact
aaagcatgtcccttcttgtttccctttgagactaggaggcaatacttctattcaacggct
tttggattatctcgtgcgcttcaccgtcttcaacagcaacagagtgctgaaaacttgagt
tcaacaagcgaaagagaggttcgtgttggccggttacagcgacagaaggttcgtgtatct
agaaatcgcatccttgattcagcagccaaagtcatggaaatgtactctagccagaaggct
gtcctggaagttgaatattttggtgaggttggcactggcttgggtccaacattagagttc
tatactctccttagtcatgacctgcaaaagatttgcttggagatgtggaggtcaagttct
tcaccagagaaaagtgtcatggaaattgatgggcaggatcaaacagttgaaaatatggat
gatgtgactgccacaaaaaagcttgttttagatcctgttggtggagagcttgtacaagca
cctcttggtctgtttcctcgtccatggcctcctaatgctgacacatctgagggtagcaaa
ttctctaaggttgttgagtacttccgcctggttgggcgagtgatggcaaaggctctacaa
gatgggcgcctgttagacctcccactatctcccgcattttttaagcttgtgttgggttat
gagcttgatttgcatgatattttatcatttgatgctgattttggaaagattttgcaagaa
atgcaagtccttgttcacaagaaggagtatttagaatctatgcctggggatcatcgggag
cttatatctgatttacgtttccgaggtgctcccattgaagatctttgtcttgattttaca
cttcctgggtattcagattatattctcaaagaaggggcagaaagcacaatggtcgatatc
cataatctggacgaatatatcactttggtagttgatgcaactgtcagaacaggaataatg
cgacaaatggaggccttcagagcagggttcaatcaggtctttgacattacatcccttcaa
atctttacaccaactgagctggactacctgctatgtggtcgccgggagctttgggagcca
gagacacttgctgatcatataaaatttgatcatgggtacacagcaaagagccctgcaatt
acaaatttgctggaaattatgggtgagtttacaccagagcagcagcgtgcattctgtcag
tttgtcactggtgctcctaggcttcctcctggaggtctggcagtccttaaccccaagctc
accattgtgagaaagcattcatcttcctccacaaacatttcatccaatggaacgggtgtt
acagaatcagctgatgaggacttgcccagtgtcatgacttgtgctaattacctcaagctt
cctccctattctaccaaggaaatcatgctcaagaaactgctctatgctgtcagtgaaggg
caaggttcatttgacctctcgtga
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integrated database retrieval system
