KEGG   Amborella trichopoda: 18429193
Entry
18429193          CDS       T02990                                 
Name
(RefSeq) DDB1- and CUL4-associated factor 13 isoform X1
  KO
K11806  DDB1- and CUL4-associated factor 13
Organism
atr  Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:atr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:atr03009]
    18429193
   04121 Ubiquitin system [BR:atr04121]
    18429193
Ribosome biogenesis [BR:atr03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    18429193
Ubiquitin system [BR:atr04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     18429193
SSDB
Motif
Pfam: WD40 Sof1 WD40_CDC20-Fz WD40_Prp19 WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EIPR1 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd NBCH_WD40 Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_DCAF4 WD40_MABP1-WDR62_1st Beta-prop_SCAP ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 WD40_RFWD3 eIF2A Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_IP5PC_F PROPPIN PEP5_VPS11_N
Other DBs
NCBI-GeneID: 18429193
NCBI-ProteinID: XP_006838547
LinkDB
Position
Unknown
AA seq 466 aa
MKPPSHSKIKIVDGMKVKVISRSAEEFTRERSQDLQRVFRNFDPKLHAQEKAVEYARALN
AAKLEKIFAKPFLGAMDGHVDAISCMAKNPNYLKGIFSGSMDGDIRLWDISSRSTVQQFV
GHKGAVRGLAASTDGSILVSCGNDCTVRLWSIPGPKIADLDDASENASNPLAVYVSKNAF
RAVDHQWDGNLFATVGAQVDIWDHSRSEPVTSFAWGSDTVVSVRFNPAHKDILATSASDR
SITLYDLRMALPSKKIVMQTRTNAIAWNPREPMNFSLANEDCNCYSYDMRNMEQAKCVHR
DHVSAVMDIDYSPTGREFVTGSYDRTVRIFQYNAGHSREIYHTKRMQRVFCVKFSCDASY
VISGSDDTNLRLWKAKASEQLGVLLPRERKKQEYLDAVKERFKHLPEVKRIVRHRHLPKP
IYKAASLRRTMADAEKKKEERKRAHSAPGTVVTVPLRKRRIVSEIE
NT seq 1401 nt   +upstreamnt  +downstreamnt
atgaagcctccaagtcattccaaaattaagatagtggatggaatgaaggttaaggtcata
tcacggtcggctgaggagttcactcgcgaacgaagccaagatctccagagggtctttcgg
aactttgatccaaaactacacgctcaagaaaaagcagtcgaatatgcccgtgctcttaat
gcagcgaagttggagaagatatttgccaaaccatttctgggagccatggatgggcatgtt
gatgcaatttcttgtatggcaaagaatccgaattacctaaagggcatattttcaggttca
atggatggagatattcgtctttgggatatatcttcgaggagtacagttcaacagtttgtg
ggtcacaaaggtgctgtgagaggcttagcagcatctacagatggaagcattcttgtatca
tgtggaaatgattgcacggtcaggctctggagtattccggggccgaagattgctgatttg
gacgatgcgtctgaaaatgcctcaaatcctcttgcagtttatgtttcgaagaatgctttt
cgtgcagttgatcaccagtgggatggtaatctgttcgccacagttggtgcacaagttgat
atatgggatcatagcaggtctgagcctgtgactagctttgcctggggaagtgatactgtt
gtctcagttcgatttaatccggcacataaagatatattagcaacttcagctagtgaccgc
agcataactttgtacgatctgcgtatggcattgccgtccaagaaaattgtcatgcagaca
agaacgaatgctattgcttggaatccgagggagccaatgaacttttccttggcaaatgaa
gattgcaactgctatagctatgatatgagaaatatggaacaagcaaagtgtgttcacagg
gaccatgtgtctgctgtcatggatattgactactctcccactggtcgggagttcgtcact
ggatcttatgacaggactgtaaggattttccaatataatgctggccatagcagagaaata
taccacaccaagagaatgcagagggtcttctgcgtgaaatttagctgtgatgcttcatat
gtgatttctgggagtgatgacaccaatctgcggttgtggaaggctaaggcatcggaacaa
ttaggagttcttcttccaagggaacgtaagaagcaggaatatctagatgctgtcaaggag
cggttcaagcacttgcctgaggttaagcgcatcgtcaggcatcggcaccttccgaaaccg
atatacaaggcggcatccctgcggcgtaccatggcagacgcagagaagaagaaggaggag
agaaagagggctcatagtgcccctgggactgtggtcactgttccccttcgcaaaaggaga
attgtctctgaaatcgaataa

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