Amborella trichopoda: 18429204
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Entry
18429204 CDS
T02990
Name
(RefSeq) LOW QUALITY PROTEIN: probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
atr
Amborella trichopoda
Pathway
atr00040
Pentose and glucuronate interconversions
atr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
18429204
Enzymes [BR:
atr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
18429204
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
18429204
NCBI-ProteinID:
XP_020520223
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All DBs
Position
Unknown
AA seq
294 aa
AA seq
DB search
MQNRLGLSQSFSYRVFGEECNSVDIYKARTKDIVGSSVCDFNEDRPGSLRDACRRKEPLW
IVFEVSGTIKLNTGIKVSSYKTIDGRGQRVKLXGKGLQLRECEHVIVCNLEFEGGRGPDV
DAIQIKPNSRHIWIDRCSLRDYDDGLIDITRASTVITVSRCHFFGHDKTMLLRADPTHID
DRCIHVTIHHCFFDGTRQRHPRVRFGKVHLYNYTRNWGIYAVCASVESQFFSQCNIYEGG
QKKVAFKYLEGKATDREYAMCGGIGSEGDMFLNAAQSGLMIESVEKRAFKPQVF
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgcagaataggcttgggctttctcagtccttttcttatagagtatttggtgaggaatgc
aacagtgttgatatctacaaagctagaaccaaagatattgttggatcgtctgtgtgtgac
ttcaatgaggatagacctggatcacttcgtgatgcctgcagaagaaaggaaccattgtgg
attgtctttgaagtttcaggaacgattaaacttaacacgggcataaaggtatcatcctat
aaaacaattgatggtcgtggccaaagggtaaagttgnctggcaagggcttgcaacttaga
gaatgtgagcatgtgattgtatgcaacctggagtttgaaggtggcaggggtcctgatgtt
gatgccattcagataaaacccaattcaaggcacatatggattgaccgttgcagtttgcgc
gattatgatgatggacttattgatataacacgggctagtaccgttatcacggtctcaaga
tgccatttttttgggcacgataaaacaatgcttcttagagcagatccaactcacattgac
gaccgatgtattcatgtgactattcatcactgtttctttgatgggacaaggcaaagacat
cctcgtgtgagatttgggaaagtgcatctatacaactacacaagaaattggggtatatat
gctgtctgtgcaagtgtagaatcacagtttttttctcaatgcaacatatatgaaggtgga
cagaagaaagtggctttcaagtatcttgaagggaaggcaacagatagagaatatgctatg
tgtggcgggataggatccgagggtgacatgttccttaatgctgctcaatctggattgatg
attgagagtgttgagaaacgtgcattcaagccccaagtgttctaa
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