Amborella trichopoda: 18429452
Help
Entry
18429452 CDS
T02990
Name
(RefSeq) splicing factor 3B subunit 3 isoform X2
KO
K12830
splicing factor 3B subunit 3
Organism
atr
Amborella trichopoda
Pathway
atr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18429452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atr03021
]
18429452
03041 Spliceosome [BR:
atr03041
]
18429452
03036 Chromosome and associated proteins [BR:
atr03036
]
18429452
Transcription machinery [BR:
atr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
18429452
Spliceosome [BR:
atr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
18429452
Complex B
18429452
Complex C
U2 SnRNP specific factors
18429452
Chromosome and associated proteins [BR:
atr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
18429452
TFTC complex
18429452
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
18429452
NCBI-ProteinID:
XP_011621584
LinkDB
All DBs
Position
Unknown
AA seq
1393 aa
AA seq
DB search
MAIAGDESGSHSHRQSEGALHYLAKCVLKGSVVLQAVHGHMRSPSSFDVIFGKETSIELV
VVSEDGVVQSVCEQTVFGTIKDLAVLRWNANCRAPILQTYGKDLLVVLSDSGKLSFLSFS
IEMHRFFPVAHSQLSEPGNSRYQLGRMLAVDSLGSFVAVAAYEGQIALFSVSKSAGKKIV
NEKVLYPPEEGEPEMGMELERLNVFGAIWSMCFISYDSAQSRGCYSPVLAVLRHRRGHCH
NELLFLEFNIKKLEAHIISCFSQHAALALSVVDVPHLPGFALLFRMGDAILVDARNPELP
HSLHRINLTILTGVTERKTTDECSGALEVDDERSFNVAASALLELRDSAIDDVKGEDPMS
IDDESSKIPTCSGFICSWSWEPCNSTNPKLIFSLDTGELYILEVSYNDEHGVKVNFTDCL
YQNLAFKTLLWVKGGFVVALLEIGDGLVIKVEDSGLVSRSPIQNIAPMLDVAIVDYHNEK
QDQIFACCGVHPEGSLRIIRNGVSVEKLLSTASVYEGVTGTWTTHMFQGDSYHSFLVLSF
VEETRVLSVGLSFTDVTDAVGFQTDTCTLGCGLLEDGVLVQICRKGVRLCSPTKAAHPEG
VPLSHPVCTSWSPENLTVNLGAVGHGLIIVATSNPCFLYMLSARSSSPYCYEIYEIQRLG
LQAEVSCISIPQEDGLEHVTTPDSVIGSVDEGQIAGFPSGIEIGKTCVIGTHKPSVELVS
FVPNEGFRLLAIGAISLTNTMGSSISGCIPQDVRLVYVDRYYILSGLRNGMLLRFEWPVI
SSTNPSELPNLSSLLPCTGTSDSPLSKSTVPIFYEQCIGVNMMERPAENSLPIQLQLIAV
RRIGVSPVILVPLCESLHADIIALSDRPWLLQTARHSQRIAYTSISFQPATHATPVCLDD
CPSGVLFVAENSLHLVEMVHTKRLNVQKFGLGGTPRRVLYHSESRTLQVLRTDCNYGSGI
SSDICCVDPLSGSVLSGFKFDPGETAKCMQLMKLRNEQVLVVGTSISSGPAIMPNGEAES
IRGRLIVFGLDHMQHSDSSSLASDSKLGSSSQLSSPFREIVGYATEQLSCSSICSSPDDA
SGDGVKLEECEACNLRVKWSFTLPGVVLAICPYLDRYILVSAGNNLFVYGILNENPQRLR
RFTSARTRFTITCITAHLNRIAVGDCRDGLLFYSYQEDLRKLEQLYCDPVQRIVADCSLL
DLDTGVVSDRRGNICFLSCANYSEDNVSPERNLTISCSYYVGETISSIRKGSFSYRNSGD
GILKGSRIIDPLLDCADSHIVASTLLGSVVIFIRISREEYDLLDAVQARLAVHPLTAPIL
GNNHDDFRGRGSPVGVPKILDGDMLAQFLELTSLQQKAILASEMPNPVGTSSKCSLPVDQ
VLRLLERIHNALN
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atggcgattgcaggcgatgaatcgggaagccatagccataggcaatcggagggggcctta
cattacttggccaagtgcgtgctcaaaggaagtgtcgtccttcaagctgttcatggccat
atgcgctccccttcctcctttgatgtaatttttggcaaggaaacatcaatcgagttggta
gtggttagcgaagatggggttgtacagtctgtttgtgaacagacagtttttggcaccata
aaagaccttgctgttcttcgatggaatgcgaactgtcgtgcaccaatactgcagacatac
gggaaagatctgttagttgttctctctgattctgggaagctttctttcttgtcattcagc
attgagatgcacaggttctttccagtggcccattcccaactttcagaaccaggaaattca
agatatcaattgggaaggatgctggctgttgattcccttggctcttttgttgcggttgct
gcatatgaagggcagattgctttgttttctgtgtcaaaatcagctgggaagaaaattgtt
aatgagaaagttttgtatccaccagaagagggggaaccggaaatgggaatggagttggag
agattgaatgtgtttggagcgatctggagcatgtgtttcatctcatatgattcagcacaa
tctaggggatgctacagtcctgtgctggctgtgcttcggcataggaggggccactgccac
aacgaacttctgtttcttgaattcaatattaagaagcttgaagcgcatatcatatcttgt
ttctcacaacatgcagctctagctttgagcgtagtggatgttcctcacctccctggcttt
gcattgttgtttaggatgggtgatgctatcttagtggatgctagaaatccagaacttccc
cattctctccacaggataaatcttacaatactaactggagttacagagagaaaaacaact
gatgagtgttctggagctcttgaagttgacgatgagagaagtttcaatgttgctgctagt
gctttattggagttgagggattctgcaattgatgatgttaaaggagaagaccccatgagt
attgatgacgaaagcagcaaaattcccacttgctccggatttatatgctcatggagctgg
gaaccatgcaattcgacaaacccaaagttgatcttctctttggatactggagaattatac
atactagaagttagttacaatgatgagcatggtgtcaaagttaactttacggactgcctt
taccaaaatctggccttcaagacattgctatgggttaagggtggatttgttgtggccctt
ttggagattggggatggattagtgattaaggtagaggatagtggattagtgtctcgaagc
cccattcagaatattgcaccaatgttagatgttgcaatagtagactatcataatgagaag
caggatcagatatttgcttgttgtggggtgcaccctgaaggatccctaaggatcattcga
aatggggtgagtgtagaaaagctcttgagcacagcctctgtctatgaaggtgtaactggc
acatggaccacacacatgtttcaaggtgattcctatcattctttccttgtgctatcattt
gttgaggagacacgtgtgctatctgtgggtttaagcttcactgatgtcaccgatgcagtt
ggcttccaaactgacacttgcactttgggatgtggacttttggaagatggggttttggta
caaatatgtagaaagggagtgagactttgttcgccaacaaaagctgctcatcctgaaggt
gtccctctctctcaccctgtttgcacatcttggagtccagagaatttgacagtaaatttg
ggggcagttggtcatggcttgataattgtggccacctccaatccttgcttcttatatatg
ctttcagctaggtcttcttcaccttattgttacgaaatttacgagattcaacggctggga
ctgcaggctgaagtgtcctgcatttcaattcctcaagaagatggacttgaacatgtgact
acaccagattctgtcattggttctgtagatgaaggccaaatagctggatttccctctggt
attgagattggtaaaacatgtgttattggaacacataagccttctgttgagcttgtgtct
tttgttccaaatgaaggcttcagactccttgccattggagcaatttcactaacaaataca
atgggtagttctatcagtggttgcataccccaggatgttaggcttgtatatgttgatcgc
tattatattctctcagggttaagaaatggaatgttactccggtttgagtggcctgtgatt
tcctcaacaaatccatcagagctacccaatttaagctccttgcttccttgtacaggcaca
tctgatagccctttgtcaaaatctacagtgccaattttttatgagcaatgtattggtgtt
aatatgatggagaggccagctgagaattccttacctatccagctacagttgattgctgta
cgtcgcattggcgtatctcctgttattctggtgcctctttgtgagtctctccacgcagat
ataattgcgttgagtgataggccctggctattacagacggcaaggcacagtcaaaggatt
gcttatacttcgatttcatttcaacctgcaacacatgctactcctgtatgtctggatgat
tgcccctctggtgtcttgtttgttgctgaaaacagcctacatttggtggaaatggttcat
acaaagaggctgaatgtgcagaaatttggccttggaggcaccccaaggagggttctatac
cacagtgaaagcagaacgctgcaagtattgcggacagattgcaattatggttctggtatc
agttcggatatttgttgtgtggatcctctaagtggctccgtactttcaggatttaagttt
gacccaggcgaaacagcaaagtgcatgcaactaatgaaactgcgaaatgaacaagtctta
gtggtcggaaccagcatttcttcaggtcctgctatcatgcctaatggtgaagctgaaagc
attcgtggacgtctaattgtatttggcctagaccatatgcagcattcagatagcagttca
ttggcctcagattctaagttgggttcatcttctcaacttagttccccatttcgtgaaatt
gttggatatgccacggaacaattgtcgtgtagtagtatatgtagcagcccagatgatgct
agtggcgatggagtgaagcttgaagaatgtgaagcctgtaacttgagagtgaagtggagt
tttacattaccaggggttgtacttgctatctgcccttatcttgatcgttacatcttggta
tctgcaggcaataatctttttgtgtatggtattttgaatgaaaaccctcaacgcttgaga
aggtttacttctgcaaggacacgcttcacaatcacctgtattactgcccatcttaataga
atcgctgtcggtgattgtcgtgatggcttacttttttattcgtatcaagaggatctcaga
aaattagaacaattgtattgtgatcctgttcagaggatagttgcagactgcagtctactg
gatttggacactggtgttgtgtcagaccgcaggggaaacatctgttttctttcatgtgca
aattattcagaagataatgtaagccccgagcggaatttgacaataagttgttcttattat
gtgggagaaaccattagcagcattaggaagggatcattttcttatagaaattctggagac
ggaatacttaagggcagcagaattattgaccctcttcttgattgtgcggatagtcacatt
gtcgcaagtaccctcttagggagtgtggtgatcttcattcgcatctctagggaagaatac
gatctgttagatgctgtacaagctagactagctgttcacccattgactgctccaatatta
ggaaataaccatgatgatttccgtggccgtggatccccggttggggttcctaagatactt
gatggggacatgctagcacaattcttggagctcacaagtcttcaacagaaggctatattg
gcatctgaaatgccaaatccagtcggtacaagctccaagtgctctctccctgtagatcag
gtactaagacttctcgaacgaatccacaatgctctcaactaa
DBGET
integrated database retrieval system
