KEGG   Amborella trichopoda: 18429505
Entry
18429505          CDS       T02990                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein isoform X4
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
atr  Amborella trichopoda
Pathway
atr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:atr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    18429505
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:atr03041]
    18429505
Spliceosome [BR:atr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    18429505
SSDB
Motif
Pfam: WD40_Prp19 WD40 Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st WD40_CDC20-Fz EIF3I Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR90_POC16_2nd Beta-prop_EML ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_IFT122_1st Beta-prop_EIPR1 NBCH_WD40 WDR90_beta-prop_4th PRP4 Beta-prop_WDR19_1st Beta-prop_TEP1_C Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_RIG_2nd Beta-prop_Vps41 eIF2A Beta-prop_SPT8 Beta-prop_WDR75_2nd Beta-prop_SCAP WD40_like Nbas_N
Other DBs
NCBI-GeneID: 18429505
NCBI-ProteinID: XP_006838854
UniProt: W1P0F9
LinkDB
Position
Unknown
AA seq 503 aa
MDSETLQPDPEPASPSSSSPSSSPDRNGPAQPPDPTLEYEISEQSRKAKERHDQAIQDLL
LKRRAQALAIPTNDSAVRARLRLLNEPITLFGEREMERRDRLRSIMAKLDAEGHLETLMK
AHEEQEMAEKEREDEEPMASYPFYTEGSKDLVDVRLDISKFSFSRASSRLERARRRRGDP
DEDEDGELNYALEYASGLTLQCSEIGDDRPLSGCGFSHDGTLLATSAWSGTAKIWSMPQV
EKVATLKGHKERATDVAFSPVSNHLATACADRTAILWNSEGSLLQTFKGHLDRLARIAFH
PSGKYLGSASFDKTWRLWDINSGVELLLQEGHSRSVYGICFHCDGSLAATCGLDALARIW
DLRTGKSILALEGHIKPVLGIDFSPNGYHLATGAEDNACRIWDLRMKKTIKVIPAHSRLI
SHVKFEPQEGYFLVTASYDCTAKVWSARDFKPIKTLSGHEAKVASLDVSADGQFIATVAM
DRTIKLWSNTSNGKEREASMDIG
NT seq 1512 nt   +upstreamnt  +downstreamnt
atggactctgagacccttcagcctgatcctgaaccagcgagcccatcctcttctagccca
agctccagcccagaccgtaatggcccagcccaacccccagaccctacacttgaatatgaa
atctcagagcaaagccgaaaggccaaggagcgacatgaccaagccatccaagacctcctc
ctaaaacgcagagctcaagccctagccattcccactaatgactcagctgttcgagctcgt
cttcgcctcctgaatgaacccattaccctattcggagagagagaaatggagcgaagggat
cgattgcgatccataatggccaaacttgatgcggagggccacctagaaaccctaatgaag
gcccatgaagagcaggaaatggctgagaaggagagagaagatgaagaacccatggcttcg
taccctttttacacagagggtagtaaggacttggttgatgtgaggttggatatttcgaag
ttttcattctctagggcttcttctaggttagagagagcgaggaggaggagaggggatccc
gatgaagatgaggatggagagctgaactatgcattggaatatgcgtcgggcttgacactt
cagtgtagtgagattggggatgataggcctctctctggttgtggtttttcgcatgatggt
acactgcttgctacgagtgcttggagtggaacagcaaaaatatggagcatgccacaagta
gaaaaggttgccactttaaaaggccacaaagaacgcgcaactgatgttgcattttctccg
gtaagcaatcatttagcaactgcatgtgccgatcgcacggcgattttgtggaactcagaa
gggtctcttttgcaaacatttaaaggtcatttggatcgccttgcccgcatcgctttccat
ccatctggaaagtacttgggcagtgctagctttgacaagacatggagactgtgggatatc
aattcaggggttgaactgctccttcaagaaggtcacagtaggagtgtttatggaatctgt
ttccattgtgatggatctctagcagcaacatgtggcttagatgctctagctcgtatttgg
gaccttcgcacaggaaaaagcattcttgctttagaaggtcatattaaacctgttcttggg
atagatttttctcccaatggctaccatttggctacaggtgccgaagacaatgcatgccgt
atttgggatttgagaatgaaaaagacaataaaagttataccagctcattctcgccttatt
tcacatgtcaagtttgaaccccaagaaggatatttcctcgttactgcttcgtatgattgt
acagccaaggtgtggtctgcacgagacttcaagcctatcaagaccctttcagggcacgaa
gcaaaagttgcaagcctagatgtatcagctgatggccaattcattgcaactgttgcaatg
gaccgaactatcaagctgtggtcgaacactagcaatgggaaggagagggaagcatctatg
gatattggttaa

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