Amborella trichopoda: 18429714
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Entry
18429714 CDS
T02990
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
atr
Amborella trichopoda
Pathway
atr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18429714
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atr03041
]
18429714
Enzymes [BR:
atr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
18429714
Spliceosome [BR:
atr03041
]
Complex C
Other components
Step II factors
18429714
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
AAA_30
FtsK_SpoIIIE
SLFN-g3_helicase
ABC_tran
AAA_29
Motif
Other DBs
NCBI-GeneID:
18429714
NCBI-ProteinID:
XP_006839060
UniProt:
W1P1X3
LinkDB
All DBs
Position
Unknown
AA seq
733 aa
AA seq
DB search
MPSSVLFEVRRQAEESVEKLVNHDRDHKVFNSGDSVFSDKDKMREQGKRKFSWRNETDES
FARMRKIAQQRKSLPIASVERRVVDEVRKNDTLIIVGETGSGKTTQLPQFLFNAGFCRDG
KLIGVTQPRRVAAVTVAKRVAEECGIELGQKVGYSIRFEDVTSSTTRIKYMTDGLLLREA
LLDPRLSKYSVIIVDEAHERTVHTDVLLGLLKNVQRARLRSPTNQCLVDSKDFHTSKVLP
LKLVIMSASLDARGFSEYLGNAKAVHVQGRQFPVDILYTYSPESDYIDAALITIFQIHLE
EGPGDILVFLTGQEEIESVERLVRERALHLSEDSRKILTVPVYSALPSEQQMQVFRPAPD
GFRKVILATNIAETSVTIPGIRFVIDTGLVKARSFNPRTGMESLVIIPISKAQALQRSGR
AGREVPGKCFRLYTEDEFGKLAESTIPEIKRCNLSNVVLQLKALGIDDVIGFDFMDKPSR
MAVVKSLEHLYVLGALTVEGKLSDPVGFQMARLPLDPIYAKGLIVASKLNCLEEMLIIVS
MLSVESIFYSPREKMEEARAARKCFASQEGDHITLLNVYRASVESLEKSRMGNQETIRDK
TVEKKLNKWCRENFINSRSLRHAREIHRQILGHVQNMGLNVTSCGQDMDQFRRCLAASFF
LNAAVKQPDGLYRAMASGQTVQIHPSSVLFGTKPDCIIFNELVRTNHNYIRNISRIDPLW
LSEFAPHYYGNKE
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgccttcttctgttctatttgaagtgagaagacaagctgaagagtcggttgagaagctt
gtaaatcatgatagagaccataaagtattcaattctggcgattcagttttctcagacaag
gataagatgagagagcaaggtaagaggaagttctcatggagaaatgaaactgatgaatcc
tttgctaggatgcgtaagattgcacaacaaaggaaatcactaccaattgcttcagttgag
agaagagttgtggacgaagtaaggaagaatgacacgctgataatagtcggtgaaactgga
agcgggaaaacaacgcagctgcctcaatttttatttaatgctggattttgtcgtgatgga
aagcttattggggtcactcaacctcgacgagttgctgctgttactgttgcaaagcgtgta
gcagaggaatgtggcattgagctaggccagaaggttggatattcaataagattcgaagat
gtcacatctagcacaacaagaatcaagtatatgactgatggattgcttttgagggaagca
ctgttggatcctcgtctttctaaatattcagtcataatagtcgatgaagctcatgagaga
acggtgcatactgatgtgctactgggtttgttaaaaaatgtacagcgtgcaagattgaga
tcccccaccaaccagtgtcttgttgattctaaggattttcatacctcaaaagttcttccc
ttaaagctggttattatgtctgctagtctggatgctagaggattttctgaatatttgggt
aatgccaaagctgttcatgtccaaggccggcaatttcctgtcgatatactatatacttac
tctcctgagtccgactatattgatgctgctttaataactatttttcagatccatctagag
gagggtccaggtgatattctagtcttcttgactgggcaagaagagattgaatctgtggaa
agacttgtgcgagagcgagctttgcacctatctgaagactctcgaaagattctaacagtt
ccagtatattctgctcttccttcagagcaacaaatgcaagtcttcagaccggcaccagat
ggtttccgaaaggttatattggcaacaaacattgctgagacatctgttaccattcctgga
attcgatttgtcatagatactggattagtgaaagctcgttcgttcaacccacggacaggg
atggaatcgttggttataataccaatttcaaaggcacaggcacttcaaaggagtggccgt
gcaggtcgtgaagtacctgggaagtgcttccggctgtatacagaggatgagtttgggaag
cttgctgaatccactatcccagagattaagcgatgcaacctttcaaacgtggtattacag
ctcaaggctctggggattgatgacgttattgggtttgatttcatggataaaccttcgagg
atggctgtggtgaagtctttggagcacttatacgtattaggggctttgactgttgaaggc
aaactctcagaccctgttggtttccaaatggcgcgcttacctttggatccaatttatgcc
aaaggacttatcgtggcaagcaagctcaactgcttggaagaaatgttaataatagtttct
atgctttcggtggaatctattttttattctcctcgtgagaagatggaggaggcaagagca
gctaggaaatgctttgctagccaagaaggagatcatatcacattgttgaatgtatatcga
gcttctgtagagagtttggagaaaagcagaatggggaatcaggaaaccattagggataaa
acggtcgaaaaaaaactaaacaaatggtgtagggagaacttcattaatagccgttctttg
aggcatgctcgagagattcacaggcaaattttgggacatgtccaaaatatgggtctgaat
gtgacttcatgtgggcaagacatggaccagtttcgtaggtgccttgccgcgtctttcttc
ctcaatgctgcagtgaagcagcctgatggattgtacagggctatggcttctggtcagaca
gtacagatccatccatcctcggtgttatttgggacaaagcccgattgtattatcttcaat
gaactggttcgaacaaatcacaattatattcgtaacataagtcgaatagatcccctctgg
ttgtctgagtttgctccacattactatgggaacaaggaatga
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