Amborella trichopoda: 18429795
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Entry
18429795 CDS
T02990
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH15 chloroplastic isoform X1
KO
K26077
ATP-dependent RNA helicase ISE2 [EC:
5.6.2.6
]
Organism
atr
Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atr03041
]
18429795
Enzymes [BR:
atr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
18429795
Spliceosome [BR:
atr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
18429795
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
Helicase_C
AAA_22
AAA_16
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
18429795
NCBI-ProteinID:
XP_011621796
LinkDB
All DBs
Position
Unknown
AA seq
1210 aa
AA seq
DB search
MSSLWRERNGGMQALASPSLWPCCEHLQGTKRYWRARANNSVFALYSPWRPTLRWARALS
NFLHSSSPSPLSAVGESTYPLNKPFSGDDEEDDEAAEEYDEAAEEYKAIYNDDEVLTRAS
EEEDDDDEEEELEGEDDFDVKEDEEVSGFVSKSPLSRFGEHKWQRVEKLRSRAREFGADI
IDLEDIISIYDFPIDKFQCLAIQAFLRGSSVVVSAPTSSGKTLIAEAAATATVTKGRRLL
YTTPLKALSNQKFREFRETFGESSVGLLTGDSVINKDSQILIMTTEILRNMLYQSVGMIA
EGSRLFQVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPEELAGWIGQ
IHGPTELITSTKRPVPLNWHFSLKNSLLPLLDEKGTKMNKKLSLAHLQRYALGAMSYREE
GLGRRKARKGERERSYGTIPTDFGESSLSENDINIIRRSQVPQVRDTLRHLRARDMLPAI
WFIFSRKGCDAAVQYLEECMLLDDCEMDEVGLALKKFRTQYPDAIREVAVRGLMRGVAAH
HAGCLPLWKSFIEELFQRGLIKVVFATETLAAGINMPARTAVIASLSKKIDTGRILLSSN
ELLQMAGRAGRRGIDKQGHVVLIQTPFEGVEECCKLLFAGPEPLVSQFTASYGMVLNLLA
GANVTRGSKEADVLKVFRAGRTLEEARQLVEQSFGNYVGSNVMVAAKEELSRIEGEIEML
TVEVSDEAVDRKSREKLLGSSYNEIIKLQEELRAQKRLRTQLRKRMELERVQALKPLLAE
LESGQLPFICLQYKDNDAVHHLIPAVYLGKIDSVSSTKYLISGDGVLDIADAELDLSDDD
DFQGTNVVEPSHYVALGSDNSSYMFTENWIKAIYTAGLPDNPLSQGDASPREIMRGLLEK
EGLQWEKLAKSAFGSLWSMEGSLETWSWSLNVPVLSSLSEDDEVLKLSEVYHEAVESYKD
QRTKVSKLRKQISRTKGFAEFKKIMDTANLTKEKIKRLKARSIRLVNRIEQIEPSGWKEF
LQVSNVIHEARAMDINTQLLFPLGETASAIRGENELWLAMVLRNKIFLDLRPAQLAAVCG
SLVSEGIKVRYWKSHSHIYEPSSIVTGTIDYLEEQRRSLLRIQAKHGVEIPCELDDQFSG
MVEAWASGLTWREIMMDCAMDDGDLARLLRRTIDILSQIPKLPDIDPSLQNNAILASNLM
DRVPINELAG
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgagctctctctggagagagagaaacggaggcatgcaagcacttgcctctccctctctt
tggccctgctgcgaacatttgcagggcacaaaaaggtactggagagcacgggcaaacaat
tcagtcttcgctctctactctccttggaggcccacattgcggtgggcgagagcgcttagc
aacttccttcactcatcctctccctctccactttctgctgttggcgagagcacttatcct
ctcaacaagccattctccggtgatgacgaggaagatgatgaagctgctgaagaatatgat
gaagctgctgaagaatataaggcaatctacaatgatgatgaagtgttaaccagggcttct
gaagaagaagatgatgatgatgaggaggaggagttggaaggagaagatgattttgatgtc
aaggaagatgaggaagtctccgggtttgtctccaaatctccattgtcaagatttggagag
cacaagtggcagagagtcgagaagctgcgttctagagctcgggaattcggggcggatatc
attgatttggaggatatcatctccatctatgactttccaattgataagtttcagtgctta
gctattcaagcattcttgaggggctcttcagttgtagtatctgcaccaacaagtagtgga
aagactttgatagcagaagctgcagcaactgctactgtaacaaagggaaggcggctgttg
tacactactcctttgaaagctctatcgaaccaaaaattccgagagttccgggaaacattt
ggtgaaagcagtgttggccttctcactggtgattctgtaataaataaagattctcaaatt
ttaattatgactacagagattcttcgcaatatgttataccaaagtgttggcatgatcgcg
gagggaagtagattattccaagttgatgtgattgtgttggatgaagtgcactatcttagt
gacatttctcgtggcactgtttgggaggagatagtgatttattgcccgaaagaggttcag
cttatatgcctttctgcaacagttgcaaaccctgaagagctagctggttggattgggcag
attcatggtcctacagagttgataacgtcgaccaagcgacctgttcccttgaattggcat
ttctctttgaagaattccttgttaccacttcttgatgagaaaggaacgaagatgaacaag
aagctctcacttgctcatctacaacgctatgctttgggagccatgtcctatcgggaggaa
ggtttgggaaggcggaaagctagaaagggtgagagagagcgaagctatggtaccatcccc
actgactttggtgaatcatcattatcagagaatgacataaatataatacgtcgctcacaa
gttcctcaggtgagagacacattgaggcatctcagggcaagggacatgcttccagctatt
tggtttatttttagccggaaaggatgtgatgcagctgttcaataccttgaggaatgtatg
ctattggatgattgtgaaatggatgaagttggattggctttgaagaagtttcgtacccag
tacccagatgcgattagagaagtggctgtcagaggccttatgcgaggggttgcagctcat
catgccggttgcttgcctctatggaaatcatttattgaagagcttttccagaggggcctt
atcaaggttgtgtttgctacagagactctagcagctggaatcaatatgccagcaagaaca
gctgttattgcatccctgagtaaaaagattgatactggacgcatcctcttaagttcaaat
gagctgttgcaaatggctggtcgagctggtcgtcgtggtattgacaaacagggccatgtt
gttcttatccagaccccatttgaaggagtcgaagaatgctgcaagcttctctttgctggt
ccagaacctcttgtgtcgcaatttactgcttcatatgggatggtgttgaatcttttggca
ggtgccaatgttactcgcggatccaaagaagcagatgttctgaaggtttttcgtgcagga
agaacactagaagaagctcggcaattagtggaacaaagctttggtaactatgttgggagt
aatgtcatggtggctgcaaaagaagagcttagcaggatagaaggggaaattgaaatgcta
actgtagaagttagcgatgaagctgttgacagaaaaagtagggaaaaattgcttgggtca
tcatacaatgagataattaaactgcaggaagaactaagggcacaaaaacgactccggact
caattgcggaaaagaatggaacttgaaagagtgcaagccttgaagccacttttggctgaa
ctggaaagcgggcagttaccctttatatgtttacaatataaagataatgatgctgtccat
cacctcattcctgctgtgtacttgggaaagatcgattcagtctcttctaccaaatatttg
attagtggagatggtgtccttgatattgcagatgcagagttggatttgagtgatgacgat
gactttcaaggaacaaatgttgttgaaccttcacattatgtggctcttggttcagataat
tcttcgtatatgttcactgagaattggattaaggccatatacacagcaggcttacctgac
aatccgttgtctcaaggtgatgcatcgcctagggaaatcatgaggggacttcttgagaaa
gaaggattacaatgggaaaagcttgcgaagtcagcatttggttctttatggtctatggaa
ggctcccttgagacatggtcatggagtttaaatgtgccagttttaagtagcctttcagaa
gatgatgaggttctgaagctgtcagaagtgtatcatgaggctgtggagagttacaaggac
cagagaactaaagtttcgaagttaaggaaacaaatctccagaacaaaaggctttgctgaa
tttaaaaagatcatggacacagccaaccttaccaaggaaaagattaagcggttgaaagct
agatctattcgtttagtcaaccggattgaacagattgaaccatcaggttggaaggagttt
ttacaggtaagcaatgtcatacatgaagcaagggctatggacattaatacacaattgttg
tttccccttggtgaaactgcatccgcaatccgtggagaaaatgaactctggctcgcaatg
gttcttcgtaataaaattttcttggacctgaggccagcacagcttgctgctgtttgtgga
agtttagtttcggaaggcattaaagtgcgttattggaaaagtcatagccatatctatgag
ccatcatctattgtcaccggcactattgattatttagaggagcaaagaagatcccttttg
cggatccaagccaaacatggagtggagattccttgtgaattggatgatcagttttctgga
atggttgaggcatgggcatctggcttaacttggagggaaataatgatggactgtgcaatg
gatgatggagatcttgcccgcctcctacggcgtacaattgatatactctctcaaattcca
aaattgccagatatcgacccatcacttcagaacaatgcaattctagcatccaatttaatg
gacagagtacccatcaatgagcttgcaggatga
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integrated database retrieval system
