Amborella trichopoda: 18429995
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Entry
18429995 CDS
T02990
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC18429995
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
atr
Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
atr04131
]
18429995
Membrane trafficking [BR:
atr04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
18429995
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps62
VPS13_M
VPS13_N
C2
Motif
Other DBs
NCBI-GeneID:
18429995
NCBI-ProteinID:
XP_020520360
LinkDB
All DBs
Position
Unknown
AA seq
2153 aa
AA seq
DB search
MTWKQTRIRFLLVMNNKERIVQEKAELDNYSYRFSWDRVCHFCQLRRCYIQLYESSLQQA
DGTVSTQLRQIERDLDSKVILLXRLIAHAKVESVKSKEAAQSRRQMKRSWWPFGWRSSSG
DTPIVEFSKESHLLEDRLTKEEWLAINKILSYQSDEEMNFPFGKDSQNTIHFLVNISIGQ
AAARIINIRQTEIICGRFEHLQICTKFCPKSIQCNIKLRFYGLSSPEGSIVQSVINEKKA
DALSATFVHSPHGENVDWQLSATIAPCHVTVLMASYNRFVDFLNRTHAVCPTVASETATA
LQLKIEKVTRKAQEQFQFVLEEQSRFDGSSDSDCFHRVIAIKKQTENSIARFLGPAVEDE
VVEMIDAFGILEIMLILKFTVDIDFDAPKLRIPLETNENIPSDGSFILDFGHFTLHSKNH
FDEQRQSLYSRFYISGRDIAAFFVTGFESADNRDVYLNQAILEVKSVAFLFLNVSQFYPL
IDRCGTSVIVDQIKVPHPNYLSTRVSFQVPNLGIHFSPARYGRIMELLSILYGTLETNDP
ADTKDFPTCRVSWHPAELSADAQILVWRLNLVHWGGDLTVKMKLHSLKIKDELQGRFSGS
IKYLACSRIYEAQDSDISDFVSVTLLTRHPGSPKYSGTDMQMNIRMSRLDFFCNRPTLVA
LIEFGLDLSILNAGLDSASDANATGRTASTESTQDAESVEATERTFVKGLLGYGKDRVVF
YLIMNVDSVLIFLNKEDDSALAMFVQESFRLDLKVHPGSLSIEGTLGNLRLCGMSLGPDH
WWGWLCDIRDQGAESLIKFTFQSYNVEDDDYAGYDYSLSGRLSAVRIVFLYRFVQEITAY
FMELANPQTQEAIRLVDKVGGVEWLIQKYEIDGATAVKLDLSLDTPIIIVPRNSKSKDFM
QLDLGHLQVRNSFSWHGCQEKDPSAVHLDVLHAEIQGINMAVGIDGVLGKPMIRQGQGLQ
IQVRRSLRDVFQSQFRLCFFQQVGVLHGVINDKEXIVILDCAYMNISEEPQLPPSFRGSS
TGPNGSIRLLVDKVNFNSQIFLSRTVTVVTVEVNYALLELCNGIVEESPLAHIALQGLWL
SYRTTSLSESDLYVTIPKFSILDIRPDIKPEMCLMLGSSFDAEKLGLYNISGSIGDTKMS
YLDDLNEKKMLEGFVADPPSVTMLLLDYRVRAHSQSFVVRIQQPRVLVVLDFLLAVGEFF
VPALGSITGKEETLNPHNDPMIKNDHIVLSAAYYEQRDDIVYLSHDRQLIVDVFDIDEFT
YDGFGGTICLREAFDLQGNPLVGLNPIIFIRCRKKLRFKNVKIEYIMNLSSSFILFAAKG
KDTWVRALIKDLTIEAGSGLVILDPVDIWGGYTCLKDKTNISVVSSDIYIRLSLSAISLV
LHLQNQAAAALQFGNASPVASCTNFVRVWTSRKGNRTWQGLTIXRPQAPSGYVILGDCMT
SGPTTPSQVVMAVSNTYGCVRKPISFQLLGLFSKIQGLEGDATQSDDQSDGDSDCSLXMP
IAPLGYCALGCIGQIGGRPPPNHIVYCIRSDLVTSAAFSDCILYVPPDQRFSSGFSIWRL
ENXSAFYAHASTECPPKTVLCDLRDILRRSPTQQSNSINIPSLDISMKNNNDIREADLGV
TSYGWDMLRSISKSSSYYMSTPHFERIWWDKGSDHRKPVSIWRPLPRPGFTILGDCITVG
LEPPTLGLMFRNDTSGLSAKPVQFTRIAHVVGKGIEEAFFWFPISPPGYASMGCIVSRTD
AMPCVESLCCLRMDLVNQANISDEAISKGSSSSGSNNWSIWKVQNQASTFLARSDLRKPS
SRLAYSIADCVKPKSRQNISAEMKLRCFSLTVLDGLYGMMTPLFYATVSNLNLVTTGRLE
AMNAVSISSIGAXTFNSQLEAWEPLVEPFDGIFKYESYESNIHMPSRVGKRVRIAATSTV
NLNITAANLETCVGSVVSWRRQVELEEKLMKATEEADNGQGQLDGSTCFALEEDDFGKVI
IENKLGCDIYVKKYVQNSKEIESLKHEESTSAWLPPPRFSDRFNFATEMRENHHYVTVHI
LDSKGLTLLDDGNKHDFFCALRLVSASQAMDQQKLFPQSARTRCVKPLISENKSELQGTV
RWNELFIFEVPQKGPPNLEVEVTNLASKAGKDLLMDPHLLSTSHNCWNIFSQC
NT seq
6462 nt
NT seq
+upstream
nt +downstream
nt
atgacatggaaacaaacacgtatcagatttctgctcgttatgaataacaaggaaagaatt
gttcaagaaaaagctgaacttgataactacagctaccggttttcttgggatagagtttgt
catttttgtcaactccgtcgatgttacattcaactttatgaaagttcactacaacaggca
gatggtactgtcagcacacaattgagacaaatagagagggacctcgactccaaagttatc
cttctttgaagattaattgcacatgctaaggttgagagtgtgaaatccaaggaagcagct
caaagtaggcgtcagatgaaaagaagctggtggccttttgggtggcgctcttcttctgga
gatacaccgattgtggaattttctaaagaatcacatttactagaagacaggctaactaaa
gaagaatggctcgcaattaataaaattttaagttaccaatcagatgaagagatgaatttt
ccttttggaaaggactcacagaatacgatacattttcttgtaaatatttcaattgggcag
gccgcagctcggataattaatatcagacaaacggaaattatctgtggtaggtttgaacat
cttcaaatctgcaccaagttttgtcctaaaagcatccagtgtaatataaagttgagattc
tatggattatcatctccggaaggctcaattgtgcagagtgtaatcaatgagaaaaaggct
gatgctttatctgcaacttttgtacactcacctcatggagaaaatgtagattggcagctc
tcagcgactattgctccatgccatgtcacggtcctgatggcaagttataatcgctttgta
gattttttaaataggactcatgctgtgtgtcccactgttgcatctgaaactgccacagct
ttacagttgaagatagagaaagtaactcggaaagctcaagagcagtttcagtttgtatta
gaagaacaaagcagatttgatggttcatctgatagtgattgcttccaccgtgtcattgct
attaaaaagcaaactgaaaacagcattgctcggtttcttggtccagctgttgaagatgag
gttgtagaaatgatagatgcatttggtatattggagatcatgctgatcttgaaatttacg
gttgatattgattttgatgctcccaaattgaggatcccccttgagacaaatgaaaatata
ccatcagatgggagttttattttagattttggtcatttcactttgcattctaaaaatcac
tttgatgagcaaaggcaaagtctgtattcacgtttttatatatcgggtagagacattgct
gctttcttcgtgactggatttgagagtgcagataatagagatgtatatctgaaccaagca
attttggaagtcaaatctgttgccttcctcttcctaaatgttagtcagttctatccacta
attgacagatgcggaacatcagtgattgttgaccagatcaaagtgccgcatccaaattac
ctatcaaccagagtttcatttcaagtacccaaccttggtatacacttctcaccagcaaga
tatggacgaattatggagttattaagcattttgtatggcactcttgaaacgaatgatcca
gcagatacaaaagacttcccaacctgccgagtttcttggcatcctgcagaattgtcagct
gatgctcagattcttgtttggcggttaaatcttgttcattggggaggtgacctaactgta
aaaatgaagctgcattctttgaaaatcaaagatgagcttcaaggccgtttctcaggatct
ataaagtatttagcatgttcccggatttatgaggctcaggacagtgatatatctgatttt
gtgtctgttacccttttgacaaggcatcctggttctcctaaatacagtgggacagatatg
cagatgaacattcgaatgtcaaggttggacttcttttgcaataggcccacacttgttgct
cttattgagtttgggttggatttgagtatcttgaatgctggattggattctgcaagtgat
gcaaatgctacgggcagaactgcttctactgaatcaactcaagatgcggaaagtgtggaa
gcaactgagcgtacatttgttaagggtttgctgggttatggcaaagatcgagttgttttc
tatttgattatgaatgttgacagtgttcttatatttctcaacaaggaggatgattcagct
cttgcaatgtttgtacaagaaagctttcggctggatttgaaagttcatccgggctctctt
tcaattgaagggaccttgggtaatttgagactttgtggtatgtctctcggtccagatcat
tggtggggatggctttgtgacatacgtgatcagggagctgagtcacttattaagttcaca
tttcagtcatacaatgttgaagatgatgattatgctggatatgactatagcttgagtgga
cgactttctgcagtgcgtattgttttcctctacagatttgttcaggagataacagcatac
ttcatggaactcgccaatccacaaactcaggaagctattcgacttgtggataaagttggt
ggtgtggaatggctgattcagaaatacgagatagatggtgccacagctgtaaagctggac
ttgtcactggacacaccaataataattgtgccacgaaattccaagagcaaagatttcatg
cagcttgatctgggccatcttcaagtgaggaacagtttcagttggcatggatgccaggaa
aaagatccttctgcagttcatcttgatgttcttcatgcggagattcagggtattaatatg
gctgtcggaatcgacggggtgctagggaagcctatgataaggcaaggccaaggacttcaa
atccaagtgcgccgtagtttgagggatgtttttcagagccaattcagattgtgttttttt
caacaggttggtgtactacatggagtgatcaacgataaggagtagattgttatccttgat
tgtgcatatatgaatatctctgaagagccacagctccctccaagcttcaggggcagctca
actggccctaatggatccatacgcttgcttgttgataaagtaaatttcaacagtcaaatc
tttctatctcgtacagtaacagttgtcactgttgaagttaactatgcattgctggagttg
tgcaatggcattgttgaagaatcacctcttgctcatattgctcttcaagggctttggtta
tcataccgcacaacttccctgtcagaatcggatctctatgttactattcctaaattttct
attctggacatccgtcctgatataaagcctgagatgtgtttaatgcttggttcttctttt
gatgctgagaaattaggcctttacaatatttctggttcaattggagatacaaagatgtca
tatcttgatgatcttaatgaaaagaagatgttagagggttttgttgcagatcctcccagt
gtaaccatgctcttgttggactacagagtccgtgcacactcccaatcctttgtcgttcgg
attcagcagcctcgcgtactagttgttctagactttcttcttgctgtgggggaatttttt
gtgcctgctttgggttccattactgggaaggaggaaactttgaatcctcacaatgatcca
atgataaagaatgatcacattgttctttcagcagcctattatgaacagagagatgacatt
gtgtacctttctcatgaccgacaattgatcgtggatgtttttgatattgatgaattcact
tatgatgggtttggtggaacaatatgtttgagagaagcttttgatttacaaggaaatcca
ttggttggcctgaatcccattatcttcatcagatgtaggaagaagttgcggtttaagaat
gtgaaaattgagtacatcatgaatttgagttcttctttcattttgtttgctgcaaaaggg
aaagatacttgggtacgagcacttattaaagatttgacaattgaagctggttctggtctt
gtgatccttgatccagtagatatttggggaggatacacttgtttgaaagataagaccaat
atctctgtggtatcttctgatatttatatccgtctttctttgagtgcgatttctctagta
cttcacttgcaaaatcaggcagctgcagcactgcaatttggcaatgcaagtccagttgct
tcatgtaccaactttgttcgagtttggacatcacggaaaggtaatagaacttggcaaggt
ctgaccatttgaagaccccaagctccttcaggttatgtcattcttggtgactgtatgaca
tctgggccaacgaccccttctcaagttgtaatggctgtgagtaatacttatggctgtgta
aggaagcctataagtttccagctcctcggtttattctccaaaatccagggattggaaggg
gatgctacccagtcagatgatcagtcagatggtgacagtgattgctctctatagatgcca
attgcacctttgggctactgtgctttaggatgcataggtcaaattggcggcagaccacca
ccaaaccacattgtttattgcattcgttctgatcttgtgacgtctgcagccttttcagat
tgcattttgtatgtccccccagaccaaaggttttcttcaggatttagcatctggcgcctt
gagaatntgtctgcattttatgcacatgcttccactgaatgccctccgaaaactgttctc
tgcgatttgcgtgatattttacgtcgtagcccaacgcagcaatcaaattcgatcaatatt
cccagcctagatatttccatgaaaaataataatgatatacgagaggctgatctgggtgtg
acttcctatgggtgggatatgcttaggtcgatttcaaaatccagtagttactacatgtcc
accccgcattttgaaagaatttggtgggataagggctctgatcatagaaaacctgtttcg
atatggcgaccgcttccacgtcctggttttaccattcttggtgattgtataactgtagga
ttggaacctcctactttaggcttaatgtttaggaacgatactagtgggctttctgctaag
cctgtgcagtttaccagaattgctcatgtagtggggaaagggattgaagaagctttcttt
tggttccccatctctcctcctggttatgcttctatgggttgcatagtgtcaaggacagat
gccatgccatgtgtggaatccctctgctgcctacgaatggatcttgttaatcaggcgaac
atttctgatgaagccattagtaagggttctagttctagcggttccaacaactggagcatt
tggaaagttcaaaatcaggctagcacattccttgcaagatctgacctgaggaaaccatct
agccgtttggcttatagcatagctgattgtgtgaaacccaagtctcgacagaatatcagt
gctgaaatgaagttaagatgcttttctttgacagtccttgatggcctctatgggatgatg
acaccactattctacgcaacagtttcgaatcttaaccttgtgacaactggccgcttagag
gccatgaatgcagtatcgatctcttccataggtgcatgaacattcaattctcaattggaa
gcatgggagcctcttgttgaaccatttgatggcatattcaagtatgaatcatatgaaagc
aatattcatatgccttccagagttggaaaacgagtgcggattgctgcaacaagcactgtg
aatcttaatatcactgctgctaatcttgaaacttgtgtggggtctgtagtttcttggaga
agacaagttgagttagaggaaaagttgatgaaagccactgaggaagcagataatggtcaa
ggacagttagatggttcaacttgttttgcattggaagaagatgattttgggaaagtaatt
atagagaataagcttggatgtgatatttatgttaaaaaatatgttcaaaactcaaaggaa
attgaatcattaaagcatgaagagagtacttcagcttggctaccaccacccaggttctca
gataggtttaattttgcgacagagatgagggaaaaccaccactatgtgaccgtgcatatc
cttgactctaagggcttgactttattggatgatggtaataaacatgacttcttctgtgct
ttacgcttggtgtctgctagtcaagctatggatcagcaaaagctatttcctcagagtgca
agaactcgatgtgtcaagcctctgatctcagagaacaagagtgaactccaaggaactgtt
aggtggaatgaactattcatctttgaagttcctcaaaagggaccaccaaatttagaggta
gaagtcacaaatcttgcttcaaaggcagggaaggatcttctgatggacccacatttgctt
agtacttcacacaattgttggaacatattcagccaatgttga
DBGET
integrated database retrieval system
