Amborella trichopoda: 18430322
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Entry
18430322 CDS
T02990
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
atr
Amborella trichopoda
Pathway
atr03018
RNA degradation
atr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18430322
09123 Folding, sorting and degradation
03018 RNA degradation
18430322
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18430322
03041 Spliceosome [BR:
atr03041
]
18430322
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18430322
mRNA degradation factors
5'-3' decay
Lsm complex
18430322
Spliceosome [BR:
atr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
18430322
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
18430322
NCBI-ProteinID:
XP_006840544
UniProt:
W1P3L4
LinkDB
All DBs
Position
Unknown
AA seq
146 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETNKSRSDRKPPGVGRGRGRGREESGGGRPMKGIGRGQE
DGKGGRGRGGPGNKGGSNRGGGRGRG
NT seq
441 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctatcactgctcaagacagctcagggacatcctatgttggtagagctaaaa
aatggggagacatacaatgggcatttagtaaactgtgacacgtggatgaatattcatttg
cgtgaggttatttgtacttctaaggatggcgacaggttttggcgaatgccagaatgttac
attagaggcaacacaataaagtatcttcgtgttccagatgaggtgatcgacaaagttcaa
gaagaaacaaacaagagccgctcggacaggaagcctccaggtgtagggcgtggtaggggc
agaggtagagaggagagtggtggtggaaggcccatgaaaggcattggtcgaggtcaagag
gatggcaaaggtggtcgtggcaggggaggacctggcaacaaaggtggcagcaacagaggt
ggggggcgtggtcgtggttga
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integrated database retrieval system
